Gene detail information of Glyur000195s00012851.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G12610.17.00E-32Integrase-type DNA-binding superfamily protein
NRAHI45172.14.32E-92DREB group protein [Ammopiptanthus mongolicus]
Swissprottr|Q9LN86|DRE1F_ARATH5.00E-62Dehydration-responsive element-binding protein 1F
trEMBLtr|W5ZSI5|W5ZSI5_9FABA2.00E-92DREB group protein {ECO:0000313|EMBL:AHI45172.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00195131634132452-


Gene family

Gene familysubfamily
Transcription Factors FamilyERF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000195s00012851.1PF00847.15AP2751271.90E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.000
SRR1783600control0.000
SRR1783602moderate drought stress0.186
SRR1811619moderate drought stress0.142

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain120.039
DRR006520Root Summer glycyrrhizin high producing strain119.555
DRR006521Root Winter glycyrrhizin high producing strain0.952
DRR006522Root Winter glycyrrhizin high producing strain0.931
DRR006523Root Summer glycyrrhizin low producing strain408.550
DRR006524Root Summer glycyrrhizin low producing strain407.619
DRR006525Leaf Summer glycyrrhizin high producing strain16.346
DRR006526Leaf Summer glycyrrhizin high producing strain16.473

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.391
SRR2868004Drought Stress(Tissue:root)9.798
SRR2967015Control (Tissue:root)91.790

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave107.775
SRR9715740Leave42.039
SRR9715741Leave75.173
SRR9715739Root682.999
SRR9715742Root703.080
SRR9715743Root664.621

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h252.333
SRR8749028MeJA induced 9h218.087
SRR8749029MeJA induced 9h148.784
SRR8749030Uninduced62.590
SRR8749031Uninduced6.325
SRR8749032Uninduced27.654

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.421
SRR8400027Control-Root11.482

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved