Gene detail information of Glyur000195s00012855.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G12710.1 | 4.00E-39 | phloem protein 2-A12 |
| NR | AFK36551.1 | 1.36E-69 | unknown [Medicago truncatula] |
| Swissprot | tr|Q9LN77|P2A12_ARATH | 7.00E-47 | F-box protein PP2-A12 |
| trEMBL | tr|I3S8F9|I3S8F9_MEDTR | 5.00E-70 | Uncharacterized protein {ECO:0000313|EMBL:AFK36551.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00195 | 163647 | 165733 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.448 |
| SRR1783600 | control | 0.432 |
| SRR1783602 | moderate drought stress | 0.350 |
| SRR1811619 | moderate drought stress | 0.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.198 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.024 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.683 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.667 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.221 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.249 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.049 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.906 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.978 |
| SRR2967015 | Control (Tissue:root) | 2.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.521 |
| SRR9715740 | Leave | 1.105 |
| SRR9715741 | Leave | 0.687 |
| SRR9715739 | Root | 0.204 |
| SRR9715742 | Root | 0.587 |
| SRR9715743 | Root | 0.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.267 |
| SRR8749028 | MeJA induced 9h | 1.437 |
| SRR8749029 | MeJA induced 9h | 1.299 |
| SRR8749030 | Uninduced | 2.274 |
| SRR8749031 | Uninduced | 2.950 |
| SRR8749032 | Uninduced | 2.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.007 |
| SRR8400027 | Control-Root | 1.295 |