Gene detail information of Glyur000195s00012864.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11660.1 | 1.00E-62 | winged-helix DNA-binding transcription factor family protein |
| NR | XP_007158472.1 | 0 | hypothetical protein PHAVU_002G155300g [Phaseolus vulgaris] |
| Swissprot | tr|Q9T0D3|HFB2B_ARATH | 5.00E-99 | Heat stress transcription factor B-2b |
| trEMBL | tr|V7CNG8|V7CNG8_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW30466.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00195 | 220776 | 223366 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000195s00012864.1 | PF00447.12 | HSF_DNA-bind | 25 | 116 | 2.50E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.980 |
| SRR1783600 | control | 4.980 |
| SRR1783602 | moderate drought stress | 6.179 |
| SRR1811619 | moderate drought stress | 6.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.797 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.784 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.848 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.467 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.168 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.543 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.947 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.110 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.238 |
| SRR2967015 | Control (Tissue:root) | 2.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.548 |
| SRR9715740 | Leave | 9.668 |
| SRR9715741 | Leave | 10.328 |
| SRR9715739 | Root | 7.338 |
| SRR9715742 | Root | 13.818 |
| SRR9715743 | Root | 11.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.094 |
| SRR8749028 | MeJA induced 9h | 7.987 |
| SRR8749029 | MeJA induced 9h | 6.265 |
| SRR8749030 | Uninduced | 1.208 |
| SRR8749031 | Uninduced | 1.689 |
| SRR8749032 | Uninduced | 4.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.251 |
| SRR8400027 | Control-Root | 11.002 |