Gene detail information of Glyur000195s00012865.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02320.2 | 3.00E-65 | myb domain protein 3r-5 |
| NR | XP_004511595.1 | 0 | PREDICTED: transcription factor MYB76-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9S7G7|MB3R1_ARATH | 2.00E-68 | Myb-related protein 3R-1 |
| trEMBL | tr|I1JA49|I1JA49_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G42650.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00195 | 226550 | 230380 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000195s00012865.1 | PF00249.26 | Myb_DNA-binding | 55 | 98 | 3.00E-16 |
| Glyur000195s00012865.1 | PF13921.1 | Myb_DNA-bind_6 | 109 | 169 | 9.00E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.228 |
| SRR1783600 | control | 3.106 |
| SRR1783602 | moderate drought stress | 1.857 |
| SRR1811619 | moderate drought stress | 1.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.065 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.072 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.638 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.540 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.186 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.184 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.950 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.528 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.011 |
| SRR2967015 | Control (Tissue:root) | 0.727 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.392 |
| SRR9715740 | Leave | 0.456 |
| SRR9715741 | Leave | 0.032 |
| SRR9715739 | Root | 0.940 |
| SRR9715742 | Root | 0.546 |
| SRR9715743 | Root | 0.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.211 |
| SRR8749028 | MeJA induced 9h | 16.461 |
| SRR8749029 | MeJA induced 9h | 20.387 |
| SRR8749030 | Uninduced | 9.752 |
| SRR8749031 | Uninduced | 8.856 |
| SRR8749032 | Uninduced | 5.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.457 |
| SRR8400027 | Control-Root | 2.839 |