Gene detail information of Glyur000196s00010858.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79380.1 | 5.00E-43 | Ca(2)-dependent phospholipid-binding protein (Copine) family |
| NR | XP_004516813.1 | 4.29E-150 | PREDICTED: uncharacterized protein LOC101514263 [Cicer arietinum] |
| Swissprot | tr|Q9SS90|RGLG1_ARATH | 4.00E-37 | E3 ubiquitin-protein ligase RGLG1 |
| trEMBL | tr|A0A072TQ65|A0A072TQ65_MEDTR | 1.00E-145 | MYND finger protein {ECO:0000313|EMBL:KEH19336.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00196 | 39811 | 63109 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.962 |
| SRR1783600 | control | 10.055 |
| SRR1783602 | moderate drought stress | 11.377 |
| SRR1811619 | moderate drought stress | 11.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.732 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.914 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.756 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.795 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.803 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.732 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.668 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.639 |
| SRR2868004 | Drought Stress(Tissue:root) | 36.017 |
| SRR2967015 | Control (Tissue:root) | 39.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 17.005 |
| SRR9715740 | Leave | 19.412 |
| SRR9715741 | Leave | 24.820 |
| SRR9715739 | Root | 21.697 |
| SRR9715742 | Root | 17.616 |
| SRR9715743 | Root | 18.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.845 |
| SRR8749028 | MeJA induced 9h | 11.581 |
| SRR8749029 | MeJA induced 9h | 7.492 |
| SRR8749030 | Uninduced | 3.669 |
| SRR8749031 | Uninduced | 2.717 |
| SRR8749032 | Uninduced | 2.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.484 |
| SRR8400027 | Control-Root | 25.497 |