Gene detail information of Glyur000196s00010864.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79430.2 | 3.00E-75 | Homeodomain-like superfamily protein |
| NR | XP_004514444.1 | 2.31E-117 | PREDICTED: myb family transcription factor APL-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9SAK5|APL_ARATH | 8.00E-95 | Myb family transcription factor APL |
| trEMBL | tr|B7FKL9|B7FKL9_MEDTR | 1.00E-114 | Putative uncharacterized protein {ECO:0000313|EMBL:ACJ85303.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00196 | 84805 | 97734 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | G2-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000196s00010864.2 | PF00249.26 | Myb_DNA-binding | 38 | 89 | 3.60E-20 |
| Glyur000196s00010864.2 | PF14379.1 | Myb_CC_LHEQLE | 132 | 172 | 4.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.753 |
| SRR1783600 | control | 1.876 |
| SRR1783602 | moderate drought stress | 3.157 |
| SRR1811619 | moderate drought stress | 3.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.565 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.958 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.837 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.645 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.530 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.497 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.679 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.738 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.659 |
| SRR2967015 | Control (Tissue:root) | 5.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.971 |
| SRR9715740 | Leave | 9.551 |
| SRR9715741 | Leave | 7.913 |
| SRR9715739 | Root | 0.116 |
| SRR9715742 | Root | 3.539 |
| SRR9715743 | Root | 4.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.535 |
| SRR8400027 | Control-Root | 2.183 |