Gene detail information of Glyur000196s00010876.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G12800.12.00E-126short-chain dehydrogenase-reductase B
NRXP_004517259.10PREDICTED: peroxisomal 2,4-dienoyl-CoA reductase-like [Cicer arietinum]
COGYP_003956089.12.00E-61short chain dehydrogenase [Stigmatella aurantiaca DW4/3-1]
Swissprottr|Q9LTV6|DECR2_ARATH3.00E-162Peroxisomal 2,4-dienoyl-CoA reductase
trEMBLtr|I3SGJ2|I3SGJ2_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK39384.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00196192447197355-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13237DECR2 EC:1.3.1.34 Peroxisome map04146


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000196s00010876.1PF13561.1adh_short_C2222613.70E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.654
SRR1783600control26.875
SRR1783602moderate drought stress16.015
SRR1811619moderate drought stress15.912

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.807
DRR006520Root Summer glycyrrhizin high producing strain30.433
DRR006521Root Winter glycyrrhizin high producing strain21.007
DRR006522Root Winter glycyrrhizin high producing strain20.443
DRR006523Root Summer glycyrrhizin low producing strain38.020
DRR006524Root Summer glycyrrhizin low producing strain39.027
DRR006525Leaf Summer glycyrrhizin high producing strain51.126
DRR006526Leaf Summer glycyrrhizin high producing strain51.456

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)55.807
SRR2868004Drought Stress(Tissue:root)58.131
SRR2967015Control (Tissue:root)49.587

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave49.657
SRR9715740Leave47.450
SRR9715741Leave53.714
SRR9715739Root8.664
SRR9715742Root18.156
SRR9715743Root19.192

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.635
SRR8749028MeJA induced 9h15.657
SRR8749029MeJA induced 9h13.841
SRR8749030Uninduced31.665
SRR8749031Uninduced17.528
SRR8749032Uninduced21.519

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root36.717
SRR8400027Control-Root37.254

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved