Gene detail information of Glyur000197s00010065.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G69640.17.00E-87sphingoid base hydroxylase 1
NRXP_006588453.11.32E-176PREDICTED: uncharacterized protein LOC100795462 isoform X1 [Glycine max]
COGNP_250588.12.00E-12hypothetical protein PA1897 [Pseudomonas aeruginosa PAO1]
Swissprottr|Q9AST3|SBH2_ARATH8.00E-121Sphinganine C(4)-monooxygenase 2
trEMBLtr|I1LDA9|I1LDA9_SOYBN5.00E-177Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G36370.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001975170854742+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04713SUR2 EC:1.14.18.5 Sphingolipid metabolism map00600


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005506  iron ion binding

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000197s00010065.1PF04116.8FA_hydroxylase992124.80E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control35.380
SRR1783600control35.424
SRR1783602moderate drought stress27.187
SRR1811619moderate drought stress26.666

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.484
DRR006520Root Summer glycyrrhizin high producing strain30.793
DRR006521Root Winter glycyrrhizin high producing strain6.053
DRR006522Root Winter glycyrrhizin high producing strain5.744
DRR006523Root Summer glycyrrhizin low producing strain22.229
DRR006524Root Summer glycyrrhizin low producing strain22.190
DRR006525Leaf Summer glycyrrhizin high producing strain11.556
DRR006526Leaf Summer glycyrrhizin high producing strain11.457

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)50.960
SRR2868004Drought Stress(Tissue:root)35.651
SRR2967015Control (Tissue:root)38.482

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.597
SRR9715740Leave7.164
SRR9715741Leave8.073
SRR9715739Root26.770
SRR9715742Root20.363
SRR9715743Root19.618

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h30.712
SRR8749028MeJA induced 9h22.202
SRR8749029MeJA induced 9h18.406
SRR8749030Uninduced7.174
SRR8749031Uninduced6.108
SRR8749032Uninduced9.734

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.520
SRR8400027Control-Root52.495

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved