Gene detail information of Glyur000197s00010076.1


Functional Annotation

DatabaseOrthologsE valueAnnotation

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001978573888492-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11124SMG6, EST1A EC:3.1.-.- mRNA surveillance pathway map03015


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
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Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.183
SRR1783600control0.200
SRR1783602moderate drought stress0.506
SRR1811619moderate drought stress0.472

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.550
DRR006520Root Summer glycyrrhizin high producing strain0.955
DRR006521Root Winter glycyrrhizin high producing strain1.605
DRR006522Root Winter glycyrrhizin high producing strain1.744
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.392
DRR006525Leaf Summer glycyrrhizin high producing strain3.089
DRR006526Leaf Summer glycyrrhizin high producing strain6.645

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.103
SRR2868004Drought Stress(Tissue:root)3.461
SRR2967015Control (Tissue:root)2.091

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.157
SRR9715740Leave23.574
SRR9715741Leave11.592
SRR9715739Root0.838
SRR9715742Root0.559
SRR9715743Root0.729

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.525
SRR8749028MeJA induced 9h1.233
SRR8749029MeJA induced 9h2.160
SRR8749030Uninduced2.402
SRR8749031Uninduced2.542
SRR8749032Uninduced1.043

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.402
SRR8400027Control-Root2.937