Gene detail information of Glyur000197s00010082.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23880.1 | 1.00E-28 | F-box and associated interaction domains-containing protein |
| NR | XP_004496419.1 | 6.85E-86 | PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] |
| Swissprot | tr|Q9LIR8|FBK67_ARATH | 2.00E-38 | F-box/kelch-repeat protein At3g23880 |
| trEMBL | tr|A0A072V7G8|A0A072V7G8_MEDTR | 2.00E-82 | F-box protein interaction domain protein {ECO:0000313|EMBL:KEH37762.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00197 | 106416 | 108651 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000197s00010082.1 | PF12937.2 | F-box-like | 16 | 52 | 5.60E-07 |
| Glyur000197s00010082.1 | PF07734.8 | FBA_1 | 234 | 329 | 3.70E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.220 |
| SRR1783600 | control | 4.155 |
| SRR1783602 | moderate drought stress | 6.439 |
| SRR1811619 | moderate drought stress | 6.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.537 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.135 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.829 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.576 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.865 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.716 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.782 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.718 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.121 |
| SRR2967015 | Control (Tissue:root) | 12.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.319 |
| SRR9715740 | Leave | 12.081 |
| SRR9715741 | Leave | 9.140 |
| SRR9715739 | Root | 4.064 |
| SRR9715742 | Root | 2.735 |
| SRR9715743 | Root | 2.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.579 |
| SRR8749028 | MeJA induced 9h | 8.379 |
| SRR8749029 | MeJA induced 9h | 4.563 |
| SRR8749030 | Uninduced | 2.203 |
| SRR8749031 | Uninduced | 4.098 |
| SRR8749032 | Uninduced | 4.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.702 |
| SRR8400027 | Control-Root | 4.398 |