Gene detail information of Glyur000197s00010084.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06240.1 | 3.00E-26 | F-box family protein |
| NR | XP_004496419.1 | 0 | PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] |
| Swissprot | tr|Q8GXC7|FBK50_ARATH | 6.00E-37 | F-box/kelch-repeat protein At3g06240 |
| trEMBL | tr|A0A072VPB6|A0A072VPB6_MEDTR | 6.00E-143 | F-box protein interaction domain protein {ECO:0000313|EMBL:KEH43491.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00197 | 110914 | 112143 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000197s00010084.1 | PF00646.28 | F-box | 62 | 99 | 6.20E-09 |
| Glyur000197s00010084.1 | PF07734.8 | FBA_1 | 255 | 345 | 7.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.625 |
| SRR1783600 | control | 16.405 |
| SRR1783602 | moderate drought stress | 19.216 |
| SRR1811619 | moderate drought stress | 20.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.970 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.663 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.578 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.489 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.526 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.060 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.617 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.996 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.933 |
| SRR2967015 | Control (Tissue:root) | 18.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.910 |
| SRR9715740 | Leave | 8.360 |
| SRR9715741 | Leave | 8.673 |
| SRR9715739 | Root | 16.545 |
| SRR9715742 | Root | 9.813 |
| SRR9715743 | Root | 10.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.152 |
| SRR8749028 | MeJA induced 9h | 21.714 |
| SRR8749029 | MeJA induced 9h | 10.934 |
| SRR8749030 | Uninduced | 8.738 |
| SRR8749031 | Uninduced | 10.727 |
| SRR8749032 | Uninduced | 13.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.005 |
| SRR8400027 | Control-Root | 10.152 |