Gene detail information of Glyur000197s00010095.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G71697.14.00E-125choline kinase 1
NRNP_001235340.10GmCK2p [Glycine max]
COGYP_002527202.14.00E-12choline/ethanolamine kinase [Rhodobacter sphaeroides KD131]
Swissprottr|Q8L518|CK2_ARATH2.00E-169Probable choline kinase 2
trEMBLtr|Q42810|Q42810_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G31030.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00197173104178121-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14156CHK EC:2.7.1.32 2.7.1.82 Glycerophospholipid metabolism map00564
Choline metabolism in cancermap05231


Gene Ontology

biological_process

GO:0046474  glycerophospholipid biosynthetic process


molecular_function

GO:0016301  kinase activity

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000197s00010095.1PF01633.15Choline_kinase662668.00E-72


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.842
SRR1783600control4.904
SRR1783602moderate drought stress10.159
SRR1811619moderate drought stress10.195

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.533
DRR006520Root Summer glycyrrhizin high producing strain15.212
DRR006521Root Winter glycyrrhizin high producing strain55.825
DRR006522Root Winter glycyrrhizin high producing strain54.513
DRR006523Root Summer glycyrrhizin low producing strain19.525
DRR006524Root Summer glycyrrhizin low producing strain19.220
DRR006525Leaf Summer glycyrrhizin high producing strain18.399
DRR006526Leaf Summer glycyrrhizin high producing strain18.556

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.306
SRR2868004Drought Stress(Tissue:root)58.668
SRR2967015Control (Tissue:root)59.473

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave83.276
SRR9715740Leave44.501
SRR9715741Leave109.484
SRR9715739Root11.316
SRR9715742Root37.284
SRR9715743Root33.673

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.468
SRR8749028MeJA induced 9h40.224
SRR8749029MeJA induced 9h18.503
SRR8749030Uninduced79.540
SRR8749031Uninduced109.869
SRR8749032Uninduced28.710

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.190
SRR8400027Control-Root15.911

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved