Gene detail information of Glyur000198s00008745.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G16750.10Transducin family protein / WD-40 repeat family protein
NRKEH31842.10transducin/WD40 repeat protein [Medicago truncatula]
COGNP_487506.15.00E-63hypothetical protein alr3466 [Nostoc sp. PCC 7120]
Swissprottr|Q6S7B0|TAF5_ARATH1.00E-24Transcription initiation factor TFIID subunit 5
trEMBLtr|A0A072UQ77|A0A072UQ77_MEDTR0Transducin/WD40 repeat protein {ECO:0000313|EMBL:KEH31842.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00198120924128165-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006364  rRNA processing


cellular_component

GO:0032040  small-subunit processome


molecular_function

GO:0005515  protein binding

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000198s00008745.1PF00400.27WD4055880.0002
Glyur000198s00008745.1PF00400.27WD40931303.60E-12
Glyur000198s00008745.1PF00400.27WD401361686.20E-06
Glyur000198s00008745.1PF00400.27WD403784181.20E-07
Glyur000198s00008745.1PF00400.27WD404234611.80E-06
Glyur000198s00008745.1PF00400.27WD404775127.50E-07
Glyur000198s00008745.1PF00400.27WD405205549.40E-09
Glyur000198s00008745.1PF00400.27WD405595962.40E-07
Glyur000198s00008745.1PF00400.27WD406026380.00025
Glyur000198s00008745.1PF08625.6Utp136617949.10E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.101
SRR1783600control6.180
SRR1783602moderate drought stress6.857
SRR1811619moderate drought stress6.821

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.300
DRR006520Root Summer glycyrrhizin high producing strain13.248
DRR006521Root Winter glycyrrhizin high producing strain18.295
DRR006522Root Winter glycyrrhizin high producing strain17.909
DRR006523Root Summer glycyrrhizin low producing strain14.009
DRR006524Root Summer glycyrrhizin low producing strain13.830
DRR006525Leaf Summer glycyrrhizin high producing strain7.159
DRR006526Leaf Summer glycyrrhizin high producing strain7.086

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.265
SRR2868004Drought Stress(Tissue:root)14.527
SRR2967015Control (Tissue:root)12.834

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.811
SRR9715740Leave13.436
SRR9715741Leave6.178
SRR9715739Root2.100
SRR9715742Root13.629
SRR9715743Root10.678

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.458
SRR8749028MeJA induced 9h19.341
SRR8749029MeJA induced 9h13.990
SRR8749030Uninduced3.243
SRR8749031Uninduced1.691
SRR8749032Uninduced2.852

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.379
SRR8400027Control-Root14.714

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved