Gene detail information of Glyur000198s00008748.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62940.1 | 2.00E-31 | Dof-type zinc finger DNA-binding family protein |
| NR | XP_003549622.1 | 7.88E-116 | PREDICTED: dof zinc finger protein DOF5.6-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FM03|DOF56_ARATH | 3.00E-35 | Dof zinc finger protein DOF5.6 |
| trEMBL | tr|K7MKQ3|K7MKQ3_SOYBN | 3.00E-116 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G09710.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00198 | 141027 | 142220 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000198s00008748.1 | PF02701.10 | zf-Dof | 64 | 121 | 2.80E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.618 |
| SRR1783600 | control | 0.629 |
| SRR1783602 | moderate drought stress | 0.491 |
| SRR1811619 | moderate drought stress | 0.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.384 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.441 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.566 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.569 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.095 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.709 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.984 |
| SRR2967015 | Control (Tissue:root) | 4.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.030 |
| SRR9715740 | Leave | 0.129 |
| SRR9715741 | Leave | 0.167 |
| SRR9715739 | Root | 0.153 |
| SRR9715742 | Root | 0.614 |
| SRR9715743 | Root | 0.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.125 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.867 |
| SRR8400027 | Control-Root | 0.992 |