Gene detail information of Glyur000198s00008751.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G62790.101-deoxy-D-xylulose 5-phosphate reductoisomerase
NRKHN34312.101-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [Glycine soja]
COGYP_005071187.101-deoxy-D-xylulose 5-phosphate reductoisomerase [Arthrospira platensis NIES-39]
Swissprottr|Q9XFS9|DXR_ARATH01-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic (Precursor)
trEMBLtr|I1K006|I1K006_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G02190.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00198157226162466-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00099dxr EC:1.1.1.267 Terpenoid backbone biosynthesis map00900


Gene Ontology

biological_process

GO:0008299  isoprenoid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005515  protein binding

GO:0030604  1-deoxy-D-xylulose-5-phosphate reductoisomerase activity

GO:0046872  metal ion binding

GO:0070402  NADPH binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000198s00008751.1PF02670.11DXP_reductoisom812092.10E-46
Glyur000198s00008751.1PF08436.7DXP_redisom_C2233032.00E-35
Glyur000198s00008751.1PF13288.1DXPR_C3354586.20E-41


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control75.277
SRR1783600control75.272
SRR1783602moderate drought stress50.850
SRR1811619moderate drought stress50.673

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain33.482
DRR006520Root Summer glycyrrhizin high producing strain33.640
DRR006521Root Winter glycyrrhizin high producing strain31.521
DRR006522Root Winter glycyrrhizin high producing strain31.438
DRR006523Root Summer glycyrrhizin low producing strain24.332
DRR006524Root Summer glycyrrhizin low producing strain24.293
DRR006525Leaf Summer glycyrrhizin high producing strain54.032
DRR006526Leaf Summer glycyrrhizin high producing strain53.887

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)131.986
SRR2868004Drought Stress(Tissue:root)201.545
SRR2967015Control (Tissue:root)142.481

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave69.643
SRR9715740Leave74.584
SRR9715741Leave89.386
SRR9715739Root83.658
SRR9715742Root65.166
SRR9715743Root68.691

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h163.124
SRR8749028MeJA induced 9h192.778
SRR8749029MeJA induced 9h218.409
SRR8749030Uninduced96.237
SRR8749031Uninduced106.935
SRR8749032Uninduced111.468

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root131.495
SRR8400027Control-Root104.789

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved