Gene detail information of Glyur000198s00008762.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47990.1 | 4.00E-126 | SUGAR-INSENSITIVE 3 |
| NR | KEH31849.1 | 0 | RING-finger ubiquitin ligase [Medicago truncatula] |
| Swissprot | tr|Q8GYT9|SIS3_ARATH | 2.00E-153 | E3 ubiquitin-protein ligase SIS3 (Precursor) |
| trEMBL | tr|A0A072UPV9|A0A072UPV9_MEDTR | 0 | RING-finger ubiquitin ligase {ECO:0000313|EMBL:KEH31849.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00198 | 233275 | 253317 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000198s00008762.3 | PF13639.1 | zf-RING_2 | 260 | 302 | 4.90E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.509 |
| SRR1783600 | control | 7.590 |
| SRR1783602 | moderate drought stress | 8.875 |
| SRR1811619 | moderate drought stress | 8.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.556 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.489 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.652 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.399 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.836 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.194 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.798 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.769 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.903 |
| SRR2967015 | Control (Tissue:root) | 14.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.865 |
| SRR9715740 | Leave | 7.078 |
| SRR9715741 | Leave | 6.118 |
| SRR9715739 | Root | 4.971 |
| SRR9715742 | Root | 5.646 |
| SRR9715743 | Root | 4.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.318 |
| SRR8749028 | MeJA induced 9h | 2.739 |
| SRR8749029 | MeJA induced 9h | 1.316 |
| SRR8749030 | Uninduced | 1.371 |
| SRR8749031 | Uninduced | 0.264 |
| SRR8749032 | Uninduced | 0.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.847 |
| SRR8400027 | Control-Root | 14.232 |