Gene detail information of Glyur000199s00018203.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47670.1 | 3.00E-34 | nuclear factor Y, subunit B6 |
| NR | XP_003556590.1 | 1.03E-44 | PREDICTED: nuclear transcription factor Y subunit B-6 isoform X1 [Glycine max] |
| Swissprot | tr|Q84W66|NFYB6_ARATH | 2.00E-42 | Nuclear transcription factor Y subunit B-6 |
| trEMBL | tr|I1NCV5|I1NCV5_SOYBN | 4.00E-45 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G00240.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00199 | 55194 | 56333 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000199s00018203.1 | PF00808.18 | CBFD_NFYB_HMF | 50 | 114 | 5.90E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.118 |
| SRR1783600 | control | 0.119 |
| SRR1783602 | moderate drought stress | 0.066 |
| SRR1811619 | moderate drought stress | 0.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.174 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.172 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.359 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.352 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.206 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.249 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.153 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.200 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.512 |
| SRR8749028 | MeJA induced 9h | 0.163 |
| SRR8749029 | MeJA induced 9h | 0.344 |
| SRR8749030 | Uninduced | 0.747 |
| SRR8749031 | Uninduced | 0.365 |
| SRR8749032 | Uninduced | 1.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.144 |
| SRR8400027 | Control-Root | 0.280 |