Gene detail information of Glyur000199s00018221.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G25800.10Polynucleotidyl transferase, ribonuclease H-like superfamily protein
NRXP_006593769.10PREDICTED: small RNA degrading nuclease 5-like isoform X1 [Glycine max]
Swissprottr|Q8L7M4|SDN5_ARATH0Small RNA degrading nuclease 5
trEMBLtr|I1LXA9|I1LXA9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G09210.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00199138908147036+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14570REX1, REXO1, RNH70 EC:3.1.-.- Ribosome biogenesis in eukaryotes map03008


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003676  nucleic acid binding

GO:0003824  catalytic activity

GO:0004527  exonuclease activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000199s00018221.1PF00929.19RNase_T2193667.90E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.856
SRR1783600control3.738
SRR1783602moderate drought stress3.461
SRR1811619moderate drought stress3.443

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.703
DRR006520Root Summer glycyrrhizin high producing strain4.573
DRR006521Root Winter glycyrrhizin high producing strain4.519
DRR006522Root Winter glycyrrhizin high producing strain4.297
DRR006523Root Summer glycyrrhizin low producing strain5.981
DRR006524Root Summer glycyrrhizin low producing strain6.019
DRR006525Leaf Summer glycyrrhizin high producing strain5.586
DRR006526Leaf Summer glycyrrhizin high producing strain5.422

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.441
SRR2868004Drought Stress(Tissue:root)9.108
SRR2967015Control (Tissue:root)9.585

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.152
SRR9715740Leave8.873
SRR9715741Leave8.223
SRR9715739Root0.405
SRR9715742Root3.115
SRR9715743Root2.332

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.942
SRR8749028MeJA induced 9h9.191
SRR8749029MeJA induced 9h5.874
SRR8749030Uninduced5.092
SRR8749031Uninduced3.418
SRR8749032Uninduced2.867

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.052
SRR8400027Control-Root9.045

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved