Gene detail information of Glyur000199s00018222.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21450.1 | 4.00E-156 | SCARECROW-like 1 |
| NR | KEH40473.1 | 0 | GRAS family transcription factor [Medicago truncatula] |
| Swissprot | tr|Q9SDQ3|SCL1_ARATH | 0 | Scarecrow-like protein 1 |
| trEMBL | tr|A0A072VGC8|A0A072VGC8_MEDTR | 0 | GRAS family transcription factor {ECO:0000313|EMBL:KEH40473.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00199 | 148124 | 151509 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000199s00018222.1 | PF03514.9 | GRAS | 331 | 495 | 8.30E-59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 42.177 |
| SRR1783600 | control | 42.196 |
| SRR1783602 | moderate drought stress | 48.560 |
| SRR1811619 | moderate drought stress | 48.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 63.359 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 62.085 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 85.283 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 83.456 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 129.411 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 129.732 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.081 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 85.445 |
| SRR2868004 | Drought Stress(Tissue:root) | 134.833 |
| SRR2967015 | Control (Tissue:root) | 142.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 68.818 |
| SRR9715740 | Leave | 69.896 |
| SRR9715741 | Leave | 80.694 |
| SRR9715739 | Root | 41.653 |
| SRR9715742 | Root | 136.065 |
| SRR9715743 | Root | 116.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 389.827 |
| SRR8749028 | MeJA induced 9h | 559.505 |
| SRR8749029 | MeJA induced 9h | 482.279 |
| SRR8749030 | Uninduced | 307.411 |
| SRR8749031 | Uninduced | 250.626 |
| SRR8749032 | Uninduced | 290.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 65.638 |
| SRR8400027 | Control-Root | 65.930 |