Gene detail

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Gene detail information of Glyur000201s00012350.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62860.1	6.00E-126	alpha/beta-Hydrolases superfamily protein
NR	XP_004494377.1	0	PREDICTED: monoglyceride lipase-like isoform X1 [Cicer arietinum]
COG	YP_003571913.1	4.00E-39	lysophospholipase [Salinibacter ruber M8]
Swissprot	tr\|Q9C942\|CSE_ARATH	9.00E-54	Caffeoylshikimate esterase
trEMBL	tr\|G7KRW6\|G7KRW6_MEDTR	0	Alpha/beta hydrolase family protein {ECO:0000313\|EMBL:AES82137.2}

Sequence

Transcript Sequence

>Glyur000201s00012350.1
CTTCTATATATGCTATTCCTCTCTGCAGGAAAGCATAAGATTTTTGCTTCTTTTTCTCATCCAATTAATAACTTGCACCATCACCTTCATATGCATAATTATACTTTCTTATAGCCTTTGNTCTAGAGAGTGTCCCTTGCAGATCCACCGCTAGGTGAAAAAGGTTGCTGCATTTTATTAGCTCCAACATCAACCGACTCTCTCGTCTCGATCGGGTTAATTTGCTAGCTANCCTTTCATGGATTTAGAGTTTGAATACCAAGAAGAGTATTGGAGGAACTCAAGGGGAGTTAAACTCTTCACTTGTAAATGGTTGCCTTTCTNTTCTCCGAAGGCCCTGCTTTTCCTTTGCCATGGTTATGGCATGGAATGCAGTCGCTTCATGAGAGAATGTGGAGTAAGGCTATCGTGTGCCGGATACGCTGTTTATGGTGTGGATTATGAAGGACATGGACGCTCTGAAGGTTCCCGTTGTTACATAAAGAAGTTCGATAATATCGTTAACGACTGTTATGACTTTTTCAAGTCAGTTAGCGTGCTCCAAGAGTACAAAGGAAAAGCTAGGTTCTTGTACGGAGAGTCGATGGGAGGGGCAATATCGGAGAAGGTGAAGCCACACCCGGTGGTGATCAACATANTGACTAAAGTGGAAGATATTATACCAAAGTGGAAGATAGTTCCCACAAAGGATGTCATCAATTCGGCCTTCAAAGACCCTGCCAAACGAGAAAAGATAAGAAGAAACAAGTTGATATACCAGGACAAGCCCAGGTTAAAAACAGCACTAGAAATGTTGAGAATCAGCATGAGTCTTGAAGACAGCTTATACAAGGTGACCCTGCCTTTTTTTGTATTGCACGGAGAAACGGATATAGTGACAGACCCAGAAGTAAGCAGGGCATTATATGAGAGAGCCAGTAGCAGAGATAAGACCATGAAATTGTACCCTGGAATGTGGCATGGCTTAACATCTGGGGAGCCTGATGACAACATCGAAATTGTCTTTGCAGACATCATAGCGTGGCTAGACAAACACGCGTCTACACAACCAGTAATTGAGACTTGTAATGATAATGATGATANCCATGGCATTGAGAATTTGACACCAGTTGCATCACCGGCAAATATGGTAAAGCAAAAAACACAGAGGCGAAGAAGCTATCTTTGNGGATTGAAAGGACGCCGCTTGCAACGCAACCCTGCAATTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00201	40427	46046	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01054	MGLL	EC:3.1.1.23	Glycerolipid metabolism	map00561
			Regulation of lipolysis in adipocyte	map04923
			Retrograde endocannabinoid signaling	map04723

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000201s00012350.1	PF12146.3	Hydrolase_4	17	95	1.90E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.405
SRR1783600	control	3.304
SRR1783602	moderate drought stress	2.590
SRR1811619	moderate drought stress	2.592

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.755
DRR006522	Root Winter glycyrrhizin high producing strain	0.611
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.093
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.753

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	12.617
SRR2868004	Drought Stress(Tissue:root)	6.670
SRR2967015	Control (Tissue:root)	6.156

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.960
SRR9715740	Leave	1.801
SRR9715741	Leave	2.666
SRR9715739	Root	2.482
SRR9715742	Root	2.135
SRR9715743	Root	2.698

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.098
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.494
SRR8749031	Uninduced	0.244
SRR8749032	Uninduced	0.155

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	20.726
SRR8400027	Control-Root	19.044