Gene detail information of Glyur000201s00012359.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G25440.11.00E-66B-box type zinc finger protein with CCT domain
NRXP_003630849.14.25E-160CONSTANS-like zinc finger protein [Medicago truncatula]
Swissprottr|Q8RWD0|COL16_ARATH4.00E-78Zinc finger protein CONSTANS-LIKE 16
trEMBLtr|G7L9P2|G7L9P2_MEDTR2.00E-160Zinc finger constans-like protein {ECO:0000313|EMBL:AET05325.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002018606188126+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-CO-like


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005622  intracellular


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000201s00012359.1PF00643.19zf-B_box19625.20E-05
Glyur000201s00012359.1PF06203.9CCT3333766.40E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.647
SRR1783600control0.700
SRR1783602moderate drought stress1.558
SRR1811619moderate drought stress1.709

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.897
DRR006520Root Summer glycyrrhizin high producing strain4.903
DRR006521Root Winter glycyrrhizin high producing strain2.090
DRR006522Root Winter glycyrrhizin high producing strain1.916
DRR006523Root Summer glycyrrhizin low producing strain7.027
DRR006524Root Summer glycyrrhizin low producing strain6.904
DRR006525Leaf Summer glycyrrhizin high producing strain67.120
DRR006526Leaf Summer glycyrrhizin high producing strain66.871

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.879
SRR2868004Drought Stress(Tissue:root)8.804
SRR2967015Control (Tissue:root)9.894

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.127
SRR9715740Leave15.992
SRR9715741Leave11.993
SRR9715739Root0.508
SRR9715742Root1.045
SRR9715743Root1.460

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.278
SRR8749028MeJA induced 9h0.413
SRR8749029MeJA induced 9h0.140
SRR8749030Uninduced0.163
SRR8749031Uninduced0.197
SRR8749032Uninduced0.175

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.325
SRR8400027Control-Root2.455

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved