Gene detail information of Glyur000201s00012384.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18290.1 | 0 | zinc finger protein-related |
| NR | XP_003525236.1 | 0 | PREDICTED: uncharacterized protein LOC100801725 [Glycine max] |
| trEMBL | tr|I1K5M4|I1K5M4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G34730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00201 | 197231 | 206752 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000201s00012384.1 | PF01814.18 | Hemerythrin | 45 | 170 | 3.30E-15 |
| Glyur000201s00012384.1 | PF01814.18 | Hemerythrin | 296 | 430 | 1.40E-06 |
| Glyur000201s00012384.1 | PF01814.18 | Hemerythrin | 645 | 808 | 1.20E-06 |
| Glyur000201s00012384.1 | PF05495.7 | zf-CHY | 992 | 1069 | 1.70E-16 |
| Glyur000201s00012384.1 | PF13639.1 | zf-RING_2 | 1120 | 1162 | 3.20E-10 |
| Glyur000201s00012384.1 | PF14599.1 | zinc_ribbon_6 | 1167 | 1225 | 1.40E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.128 |
| SRR1783600 | control | 5.146 |
| SRR1783602 | moderate drought stress | 6.671 |
| SRR1811619 | moderate drought stress | 6.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.920 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.861 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 36.986 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 35.860 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.431 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.394 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.927 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.518 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.050 |
| SRR2967015 | Control (Tissue:root) | 9.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.883 |
| SRR9715740 | Leave | 9.128 |
| SRR9715741 | Leave | 11.991 |
| SRR9715739 | Root | 0.433 |
| SRR9715742 | Root | 3.253 |
| SRR9715743 | Root | 2.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.955 |
| SRR8749028 | MeJA induced 9h | 6.160 |
| SRR8749029 | MeJA induced 9h | 3.440 |
| SRR8749030 | Uninduced | 12.190 |
| SRR8749031 | Uninduced | 16.229 |
| SRR8749032 | Uninduced | 12.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.061 |
| SRR8400027 | Control-Root | 8.961 |