Gene detail information of Glyur000202s00015382.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02440.1 | 3.00E-53 | F-box family protein |
| NR | AGV54802.1 | 1.21E-111 | phytochrome A-associated F-box protein [Phaseolus vulgaris] |
| Swissprot | tr|Q8LEA8|EID1_ARATH | 7.00E-64 | Phytochrome A-associated F-box protein |
| trEMBL | tr|T2DPN3|T2DPN3_PHAVU | 5.00E-112 | Phytochrome A-associated F-box protein {ECO:0000313|EMBL:AGV54802.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00202 | 1180 | 1890 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.349 |
| SRR1783600 | control | 24.567 |
| SRR1783602 | moderate drought stress | 50.982 |
| SRR1811619 | moderate drought stress | 50.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.573 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.983 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 320.840 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 315.677 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.682 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.486 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.593 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.705 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.129 |
| SRR2967015 | Control (Tissue:root) | 11.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.782 |
| SRR9715740 | Leave | 3.942 |
| SRR9715741 | Leave | 7.499 |
| SRR9715739 | Root | 46.483 |
| SRR9715742 | Root | 17.014 |
| SRR9715743 | Root | 24.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 66.363 |
| SRR8749028 | MeJA induced 9h | 99.808 |
| SRR8749029 | MeJA induced 9h | 136.681 |
| SRR8749030 | Uninduced | 57.864 |
| SRR8749031 | Uninduced | 23.556 |
| SRR8749032 | Uninduced | 102.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.774 |
| SRR8400027 | Control-Root | 21.768 |