Gene detail information of Glyur000202s00015389.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G62830.20NAD(P)-binding Rossmann-fold superfamily protein
NRXP_004495956.10PREDICTED: UDP-glucuronic acid decarboxylase 2-like [Cicer arietinum]
COGYP_007108422.13.00E-159NAD-dependent epimerase/dehydratase [Geitlerinema sp. PCC 7407]
Swissprottr|Q9LZI2|UXS2_ARATH0UDP-glucuronic acid decarboxylase 2
trEMBLtr|G7IF53|G7IF53_MEDTR0UDP-glucuronic acid decarboxylase-like protein {ECO:0000313|EMBL:AES61772.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002025215357402+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08678UXS1, uxs EC:4.1.1.35 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0050662  coenzyme binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000202s00015389.1PF01370.16Epimerase1163448.70E-42


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control95.702
SRR1783600control95.759
SRR1783602moderate drought stress74.489
SRR1811619moderate drought stress73.580

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain91.937
DRR006520Root Summer glycyrrhizin high producing strain91.256
DRR006521Root Winter glycyrrhizin high producing strain49.749
DRR006522Root Winter glycyrrhizin high producing strain48.388
DRR006523Root Summer glycyrrhizin low producing strain61.586
DRR006524Root Summer glycyrrhizin low producing strain62.342
DRR006525Leaf Summer glycyrrhizin high producing strain20.836
DRR006526Leaf Summer glycyrrhizin high producing strain20.770

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)134.761
SRR2868004Drought Stress(Tissue:root)80.102
SRR2967015Control (Tissue:root)80.057

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave31.023
SRR9715740Leave12.921
SRR9715741Leave16.516
SRR9715739Root93.182
SRR9715742Root92.000
SRR9715743Root82.404

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h136.848
SRR8749028MeJA induced 9h86.701
SRR8749029MeJA induced 9h84.842
SRR8749030Uninduced78.553
SRR8749031Uninduced35.333
SRR8749032Uninduced33.166

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root118.315
SRR8400027Control-Root118.670

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved