Gene detail information of Glyur000202s00015411.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02330.1 | 0 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | XP_003591482.1 | 0 | Pectinesterase [Medicago truncatula] |
| COG | YP_001821146.1 | 5.00E-52 | pectinesterase [Opitutus terrae PB90-1] |
| Swissprot | tr|Q8RXK7|PME41_ARATH | 0 | Pectinesterase 41 (Precursor) |
| trEMBL | tr|G7IEK2|G7IEK2_MEDTR | 0 | Pectinesterase/pectinesterase inhibitor {ECO:0000313|EMBL:AES61733.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00202 | 170818 | 172986 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000202s00015411.1 | PF04043.10 | PMEI | 36 | 184 | 3.20E-21 |
| Glyur000202s00015411.1 | PF01095.14 | Pectinesterase | 251 | 548 | 5.50E-139 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.027 |
| SRR1811619 | moderate drought stress | 0.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.444 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.974 |
| SRR2967015 | Control (Tissue:root) | 12.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.078 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.361 |
| SRR8749028 | MeJA induced 9h | 0.341 |
| SRR8749029 | MeJA induced 9h | 0.108 |
| SRR8749030 | Uninduced | 0.031 |
| SRR8749031 | Uninduced | 0.216 |
| SRR8749032 | Uninduced | 0.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.974 |
| SRR8400027 | Control-Root | 1.083 |