Gene detail

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Gene detail information of Glyur000202s00015412.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02320.1	7.00E-146	Plant invertase/pectin methylesterase inhibitor superfamily
NR	XP_007145198.1	0	hypothetical protein PHAVU_007G218500g [Phaseolus vulgaris]
COG	YP_004318102.1	2.00E-46	pectinesterase [Sphingobacterium sp. 21]
Swissprot	tr\|O81301\|PME40_ARATH	6.00E-177	Pectinesterase 40 (Precursor)
trEMBL	tr\|V7BH80\|V7BH80_PHAVU	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur000202s00015412.1
ATGAATAGCCTCAGAAGAACAACACCTTTTCTANTTGTTGTATTCATAATTCTGACCGTGGTTTTTCCTCTACTGATTTTGGGAACCCATAATGTCATTGCAGACACCCACCAAGAAAAACACCTCCATTTCCAAAAGNACATGCAAGTAGCCAAGTCTACATGCGAAGGAACACTCTACCCAGACCTCTGTGTCTCAACCCTTGTCACATTCCCAGATCTTGCCTCAAAATCCGTCCCACAAATGATCTCCTCCATGGTCAACCACACAGTAAACGAGGTCAAATCATCCTCCTACAACTGCAGCGGNCTCAGAAAGAACCTCAGGAACATCAACCCACTAGAACAGAGAGCCCTCGACGACTGTCTCAACCTGTTCGACGACACCATTGTGGAGCTCAAAACCACCATTGCCGATCTCTCTGCCAGAACCACAACAATAGACTCCAAGCGGCACCGTGACCTGCAGACTCTGCTAAGTGGNGCAATGACCAACTTATACACGTGCCTCGATGGGTTTGCTTACAGCAGAGGGAATGTCAGAGACAGAATACAGGAGAAACTGTTTGAGATATCACATCACGTTAGTAATACTTTGGCCATGCTGAAGAGAGTGCCCGGGGTNGTGAAGAAAACTTCAAAGTCTGAAGCTTTCCCTGAGTATGGAAAATTGAAAGACGGTTTCCCCACGTGGGTGTCCCCGAAAGACCGAAAGCTGATCCTTCAAGGTTCTGTGAATGAAACCAAGTTTGTGATACACATAAAGGCAGGGGCATACTTGGAGAACGTGGAAGTTATAAGGAAGAAGAGAAATCTGATGTTTGTTGGAGATGGGATTGGGAAGACAGTNGTGAAAGCCAGTAGGAATGTTGTGGACGGGTGGACCACTTTCCAATCCGCTACTGTTGCTGTGGTAGGAAACGGATTCATAGCAAAGGGTATAACATTTGAGAACTCGGCAGGGCCAGAGAAGCACCAAGCGGTGGCCCTAAGGAGTGGCGCCGACTTTTCAGCCTTTTACAAATGCAGCTTTGTTGGGTACCAAGACACACTCTATGTCCATTCCCTACGCCAATTCTATAGCGAATGCGACATTTATGGAACCGTAGACTTCATTTTTGGCAACGCAGCCGTGGTCTTCCAAAACTGCAACTTATACGCACGCAAGCCCAATGAAAACCAGAAAAACATGTTCACTGCGCAAGGCAGAGAGGACCCTAACCAAAACACTGGCATATCCATCCTGAACTGCAAGATCGCTGCTGCAGCCGATTTNATCCCGGTGAAATCGTCGTTCAAGAACTACTTGGGTCGACCCTGGAAATTGTACTCGAGGACGGTTTATATCAAATCTTACATCGACGATCTGATAGACCCGAAAGGGTGGTTGGAATGGAATGAGACATTTGCATTGGATACATTGTATTATGGGGAGTACATGAATAGGGGTCCAGGGTCAAACACGAGTGCTAGAGTTACGTGGCCAGGTTATAGGGTCATCAAGAATTCCACAGAGGCGAGCCAATTTACTGTTGGGCAGTTTATACAGGGTAATGACTGGTTGAACTCCACTGGAATTCCTTTCTTCTCTGGATTGAGTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00202	177525	182092	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component GO:0005618 cell wall molecular_function GO:0004857 enzyme inhibitor activity GO:0030599 pectinesterase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000202s00015412.1	PF04043.10	PMEI	49	201	7.00E-26
Glyur000202s00015412.1	PF01095.14	Pectinesterase	246	518	2.30E-135

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.241
SRR1783600	control	1.355
SRR1783602	moderate drought stress	0.196
SRR1811619	moderate drought stress	0.193

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.468
DRR006520	Root Summer glycyrrhizin high producing strain	0.468
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.570
DRR006524	Root Summer glycyrrhizin low producing strain	0.744
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.075
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.095

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.823
SRR2868004	Drought Stress(Tissue:root)	1.665
SRR2967015	Control (Tissue:root)	2.448

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.850
SRR9715740	Leave	0.000
SRR9715741	Leave	0.285
SRR9715739	Root	0.000
SRR9715742	Root	0.838
SRR9715743	Root	0.965

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.044
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.001
SRR8749030	Uninduced	0.001
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.043

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.115
SRR8400027	Control-Root	4.130