Gene detail information of Glyur000202s00015413.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02290.1 | 0 | glycosyl hydrolase 9B13 |
| NR | XP_007145197.1 | 0 | hypothetical protein PHAVU_007G218400g [Phaseolus vulgaris] |
| COG | YP_290232.1 | 6.00E-97 | endoglucanase [Thermobifida fusca YX] |
| Swissprot | tr|O81416|GUN17_ARATH | 0 | Endoglucanase 17 (Precursor) |
| trEMBL | tr|V7BKT9|V7BKT9_PHAVU | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00202 | 192564 | 194849 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000202s00015413.1 | PF00759.14 | Glyco_hydro_9 | 48 | 508 | 5.20E-174 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.263 |
| SRR1783600 | control | 2.277 |
| SRR1783602 | moderate drought stress | 0.565 |
| SRR1811619 | moderate drought stress | 0.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.729 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.600 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.274 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.137 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.270 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.198 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.819 |
| SRR2967015 | Control (Tissue:root) | 6.807 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.666 |
| SRR9715740 | Leave | 0.097 |
| SRR9715741 | Leave | 0.811 |
| SRR9715739 | Root | 0.989 |
| SRR9715742 | Root | 1.821 |
| SRR9715743 | Root | 2.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.038 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.531 |
| SRR8400027 | Control-Root | 11.692 |