Gene detail

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Gene detail information of Glyur000202s00015414.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G02280.1	sucrose synthase 3
NR	XP_004495938.1	PREDICTED: sucrose synthase 2-like [Cicer arietinum]
COG	YP_003529337.1	sucrose synthase [Nitrosococcus halophilus Nc 4]
Swissprot	tr\|O24301\|SUS2_PEA	Sucrose synthase 2
trEMBL	tr\|G7IEL2\|G7IEL2_MEDTR	Sucrose synthase {ECO:0000256\|RuleBase:RU280817}

Sequence

Transcript Sequence

>Glyur000202s00015414.1
CGCCCTCCGGTTTTATGTTGAAACGAAAAATAAACAGAGGCTAAAGCCATTTACCAATAATAATATATCTCCAGTCCACATTTTCCTGTCTTGTGATCTTGAACTCCAAGCTCGAAAATGCCGGAAAGGTGTTGAACGTTGAACTCATAACATGACCACCATCGCGTGAGATGTGCATGCTTATGAATGGGATGGAACAATGAATGGCAATCGAACACGACACCAACCTTATTTCGCGAAACTTTGTTTTCACTTCCTCCTTCGGAGCCAACACGTCACGTCACAAATTCTCACTCTCTAATTTATCTATCACTAATTTATAGCATCTCAGAACTATGGCAGAGAGGAGCTTTATGTAATAGTGAAAGAAGAAGAAGAAGAAGAAGATACCTACCCCATCGATCGTCATTGTTATCATCATGTCTCAACCTAAGCTTGGTAGACTTCCTAGTATCAGAGACCGAGTGGAGGGTACCCTCTCCGCTCACCGTAACGAACTTGTTTCTCTCCTCTCCAGGTACGTGGAACAGGGGAAAGGGATTTTGCAACCCCATAATTTGATTGATGAGTTGGACAATATCAAAGGCCAGGATCAAGCTTCTGGGGATCTCAAAAATGGCCCCTTCGGCGATATCATCAGGTCCGCCCAGGAAGCCATCGTTTTGCCTCCTTTTGTGGCAATAGCAGTTCGTCCACGACCTGGCATTTGGGAACATGTCCGTGTTAACGTTTTTGAACTTAGTGTGGAGCAATTAAGCGTTTCTGAATATCTCCGCTTCAAAGAAGAACTTGTAGATGGAACGAATATTGACCCTTGTGTATTAGAGCTTGATTTTGAACCTTTCAATGCCTCATTTCCTCGACCAACCCGCTCATCATCCATTGGCAATGGTGTTCAGTTTCTCAATCGCCACCTTTCTTCAATTATGTTTCGAAACAAAGATTCATTGGATCCATTGCTTGATTTCCTCCGAGCTCACAAATATAAAGGCCATGGACTGATGTTAAATGATCGTATACATAGCGTTTCCAAACTTCAGTCTGCTTTGGCCAAGGCTGAGGAGTATCTTTCTAAGCTTGCATCTGATACACCCTATTCTGAGTTTGAATATGTATTGCAAGGAATGGGTTTTGAGAGAGGTTGGGGTGATACAGCTGAACGGGTATTGGAGATGATGCATCTGCTCTTGGAACTTCTTCAGGCTCCTGATCCTTCTACATTAGAGACATTTCTTGGGAGAGTGCCAATGGTGTTCAATGTGGTTATATTATCACCTCATGGGTACTTTGGGCAAGCTAATGTCCTGGGTTTGCCTGACACTGGTGGGCAGGTTGTTTATATACTGGATCAAGTGCGTGCCCTTGAGAACGAGATGCTCCTTAGGATCAAGAAACAAGGACTTGATTTCACTCCTAGAATTCTAGTTGTTACCAGGTTAATACCTGATGCAAAGGGGACAACATGCAACCAGCGGCTAGAAAAAGTCAGTGGNACTGAACATACTCATATTTTGCGAGTTCCTTTCCGATCAGATAAAGGAATTCTCAATAAATGGATCTCAAGGTTTGATGTATGGCCTTATCTGGAGACTTATGCAAAGGATGTTGCCAGTGAAATTGCTGCTGAGTTACAAGGTCATCCTGATTTCATCATTGGAAACTACAGTGATGGGAATCTTGTTGCATCTTTACTAGCTTGTAAAATGGGAGTTACACAGTGCACAATTGCACATGCACTGGAGAAAACAAAATATCCAGATTCAGGTACATATTGGAAGAAGTTTGATGATAAATATCATTTTTCATGTCAGTTCACTGCTGACCTAATAGCCATGAATAGTGCTGATTTTATCATCACCAGTACATACCAAGAGATTGCAGGAACGAAGAATACTGTTGGCCAGTATGAGAGTCACACTGCTTTTACTCTTCCTGGGCTCTACAGGGTTGTTCATGGCATTGATGTTTTCGATCCCAAGTTCAATATTGTCTCTCCTGGAGCAGATATGTGCATATATTTTCCCTACTTCGAAAAGCAGAAAAGACTTACATCTCTGCACGGTTCAATTGAAAAGTTATTATATGATCCTGAGCAGACTGATGAATACATTGGTACACTGAAAGATAAGTCAAAGCCCATAATTTTCTCCATGGCAAGGCTAGACCGAGTGAAAAACATAACTGGGTTGGTAGAAAGCTTTGGTAAGAACAGCAAACTGAGAGAGCTGGTCAACCTTGTTGTGGTAGCTGGTTATATTGATGTAAGCAAGTCNAGGGACAGAGAAGAAATTGCAGAAATTGGAAAGATGTATGATCTCATAAAAACACACAATTTAGATGGCGATTTTCGATGGATTGCTGCCCAAACAAATAGAGCGCGTAATGGTGAGTTGTATCGGTACATAGCAGACACAAAAGGTGCTTTCGTTCAGCCAGCCTTCTATGAAGCTTTTGGGCTTACAGTTGTGGAGTCCATGACTTGTGGCCTCCCCACATTTGCTACTTGCCATGGTGGCCCGGCTGAGATTATCGAGCATGGTAAATCAGGATTCCATATTGATCCTTATCACCCTGATCAAGCTTCTGAGCTGTTGGTTGAATTCTTCCAAAAATGCAAGGATGACCCAGGTCATTGGAATAAAATATCTGATGGTGGTCTTNGGAGAATTTATGAAAGGTTCACATGGAGGATCTATTCTGAAAGGCTTATGACCTTGGCGGGAGTTTATAGTTTCTGGAAGTATGTTTCAAAATTAGAGAGGCGTGAAACTCGACGATATCTTGAGATGTTCTATACCCTTAAATACCGTGATTTGGCCAAGTCTGTTCCGCTAGCAAAGGANGATGATGCAAATTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00202	197221	202711	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00695	E2.4.1.13	EC:2.4.1.13	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005985 sucrose metabolic process

GO:0009058 biosynthetic process

molecular_function GO:0016157 sucrose synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000202s00015414.1	PF00862.14	Sucrose_synth	8	555	0
Glyur000202s00015414.1	PF00534.15	Glycos_transf_1	566	730	1.60E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.993
SRR1783600	control	2.034
SRR1783602	moderate drought stress	0.446
SRR1811619	moderate drought stress	0.450

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.698
DRR006520	Root Summer glycyrrhizin high producing strain	0.735
DRR006521	Root Winter glycyrrhizin high producing strain	0.078
DRR006522	Root Winter glycyrrhizin high producing strain	0.076
DRR006523	Root Summer glycyrrhizin low producing strain	1.926
DRR006524	Root Summer glycyrrhizin low producing strain	1.865
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.374
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.418

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.140
SRR2868004	Drought Stress(Tissue:root)	0.085
SRR2967015	Control (Tissue:root)	0.081

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.844
SRR9715740	Leave	0.517
SRR9715741	Leave	0.645
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.001

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.613
SRR8749028	MeJA induced 9h	5.905
SRR8749029	MeJA induced 9h	3.882
SRR8749030	Uninduced	0.791
SRR8749031	Uninduced	0.363
SRR8749032	Uninduced	1.427

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.132
SRR8400027	Control-Root	0.303