Gene detail information of Glyur000202s00015422.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G50950.26.00E-147FUMARASE 2
NRXP_007145184.10hypothetical protein PHAVU_007G217600g [Phaseolus vulgaris]
COGNP_968219.14.00E-143fumarate hydratase [Bdellovibrio bacteriovorus HD100]
Swissprottr|Q9FI53|FUM2_ARATH0Fumarate hydratase 2, chloroplastic (Precursor)
trEMBLtr|V7BJH7|V7BJH7_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW17178.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00202255520258800-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01679E4.2.1.2B, fumC EC:4.2.1.2 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
Carbon fixation pathways in prokaryotesmap00720
Pathways in cancermap05200
Renal cell carcinomamap05211


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle


molecular_function

GO:0003824  catalytic activity

GO:0016829  lyase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000202s00015422.1PF00206.15Lyase_131693.60E-59
Glyur000202s00015422.1PF10415.4FumaraseC_C2352893.70E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.574
SRR1783600control8.594
SRR1783602moderate drought stress5.862
SRR1811619moderate drought stress5.681

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.939
DRR006520Root Summer glycyrrhizin high producing strain14.001
DRR006521Root Winter glycyrrhizin high producing strain7.185
DRR006522Root Winter glycyrrhizin high producing strain7.104
DRR006523Root Summer glycyrrhizin low producing strain10.808
DRR006524Root Summer glycyrrhizin low producing strain11.011
DRR006525Leaf Summer glycyrrhizin high producing strain13.194
DRR006526Leaf Summer glycyrrhizin high producing strain12.811

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.225
SRR2868004Drought Stress(Tissue:root)11.062
SRR2967015Control (Tissue:root)13.773

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.011
SRR9715740Leave11.203
SRR9715741Leave23.879
SRR9715739Root3.892
SRR9715742Root9.605
SRR9715743Root7.568

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.362
SRR8749028MeJA induced 9h6.043
SRR8749029MeJA induced 9h7.847
SRR8749030Uninduced8.167
SRR8749031Uninduced9.287
SRR8749032Uninduced8.866

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.777
SRR8400027Control-Root11.802

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved