Gene detail information of Glyur000203s00012873.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38010.1 | 0 | Neutral/alkaline non-lysosomal ceramidase |
| NR | XP_004501980.1 | 0 | PREDICTED: neutral ceramidase-like [Cicer arietinum] |
| Swissprot | tr|Q304B9|NCASE_ARATH | 0 | Neutral ceramidase (Precursor) |
| trEMBL | tr|G7J608|G7J608_MEDTR | 0 | Neutral/alkaline non-lysosomal ceramidase {ECO:0000313|EMBL:AES71552.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00203 | 14144 | 18576 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12349 | ASAH2 | EC:3.5.1.23 | Sphingolipid metabolism | map00600 |
| Sphingolipid signaling pathway | map04071 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000203s00012873.1 | PF04734.8 | Ceramidase_alk | 28 | 721 | 7.00E-249 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.172 |
| SRR1783600 | control | 0.176 |
| SRR1783602 | moderate drought stress | 0.076 |
| SRR1811619 | moderate drought stress | 0.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.070 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.059 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.586 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.456 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.078 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.091 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.109 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.238 |
| SRR2967015 | Control (Tissue:root) | 0.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.064 |
| SRR9715740 | Leave | 0.012 |
| SRR9715741 | Leave | 0.080 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.226 |
| SRR9715743 | Root | 0.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.065 |
| SRR8749029 | MeJA induced 9h | 0.004 |
| SRR8749030 | Uninduced | 0.098 |
| SRR8749031 | Uninduced | 0.034 |
| SRR8749032 | Uninduced | 0.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.164 |
| SRR8400027 | Control-Root | 0.125 |