Gene detail information of Glyur000203s00012883.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61220.1 | 4.00E-76 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_003601313.1 | 0 | Short-chain dehydrogenase/reductase [Medicago truncatula] |
| COG | YP_008149897.1 | 1.00E-43 | hypothetical protein SCE1572_17400 [Sorangium cellulosum So0157-2] |
| Swissprot | tr|Q9M2E2|SDR1_ARATH | 1.00E-92 | (+)-neomenthol dehydrogenase |
| trEMBL | tr|G7J620|G7J620_MEDTR | 0 | Short chain dehydrogenase/reductase {ECO:0000313|EMBL:AES71564.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00203 | 53481 | 55555 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K15095 | E1.1.1.208 | EC:1.1.1.208 | Monoterpenoid biosynthesis | map00902 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000203s00012883.1 | PF00106.20 | adh_short | 31 | 118 | 4.40E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.497 |
| SRR1811619 | moderate drought stress | 0.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.393 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.435 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.113 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.062 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.048 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.397 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.491 |
| SRR2967015 | Control (Tissue:root) | 0.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.091 |
| SRR9715740 | Leave | 0.038 |
| SRR9715741 | Leave | 0.091 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.161 |
| SRR9715743 | Root | 0.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.067 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.744 |
| SRR8400027 | Control-Root | 0.739 |