Gene detail

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Gene detail information of Glyur000203s00012886.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G27110.2	FAR1-related sequence 3
NR	XP_004501994.1	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9ZVC9\|FRS3_ARATH	Protein FAR1-RELATED SEQUENCE 3
trEMBL	tr\|I1NE48\|I1NE48_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G11710.1}

Sequence

Transcript Sequence

>Glyur000203s00012886.1
ACAATTTTAACTCAGATCCCACTTTGATAAAAGGGNTCTAAACCAACGGTGGCCGTTCAATCTAGATCAAACGGCACACATCACGCGTGTGTACTTATGTCACATCGAATCTGTGCGACACGCACTCACATTCTCTTCCCTCTCTCTCTCGTCTGCAACTCCCTGGTGGTGGAGAAACCCTAACCACCTCCAACACACGGTCGTTTCGTTTCGTTTCGTTTCGTTTCCGAACCTCACTGTTCACGAGCGTCTTCACCACCGTTCCGAAGAGAAGTGCTTTCCGCGAATTCGGTTTTCTGTGATTTTTCAACCCTGAAATCTGGAGATTCGTGAATCAAATTGTCGTCACCTTGTAGTAATTCCTGGGTGCTCATGGTCCTTGCTGGTTAAAGTATACAGTCCATGATCAGTACATTTGCTCATAAATTAGGCATACAACACTATAGCAGTATAAGTTGTTTCAAATGGATGTTCAAGTGATAAATGTCGAAGAAGGAAGTNATCATCAATCTAAGGCTGATGATGGGGATGCAGAACCTAGTGACAGTGAAATTAATAATGCTGAAAACTCTGGATCTCATGTTGAGGAAGTGATTTCTGAGCCATATGTAGGTATGGAATTTGATTCTGAAGATGTTGCCAAGACTTTCTACGATGAGTATGCTAAATGCATGGGTTTCAGCTCTAATGTTGGCTCACGTGGTCGCTCTAAAGCTGATGGGCGGAATGTGTATCAGGAGTTTGTGTGTGCAAGGGAAGGTTTAAAAAAAAGGTTAAACGATGGTTGTGATGCAATGATTAGGATTGAGCTAAAGGGTCAAAATAAATGGGTTGTAACAAAATTTGTGAAGGAGCATAGTCATTCAACGGTGAATTCCAGTAAGGCACAAAAACTTCGGCCAACTAAGCATTTTTCCACTGTTGGAAGGACAATGCCTGAAACTTATCATGGAGTGGGACTTGTTCCAAGTGGTGTCATGTATGTATCCATGGATGGGAATCACATTTCTAATCAGAATACTCNTGGGATGCAGAATATTCATGCTGCCGCTGAACCAAGTCACCCAGTTAAAAGTTCCACATTGATGAATCATACTGTTAAGCCACCTTTTCAAAACAGGACATTNGGGAAGGATGCTCATAATCTGCTGGAGTATTTTAAGAAAATGCAGGCTGAGAACCCTGGTTTCTTCTATGCTATACAACTCGATGAAGACAATCATATGTCTAATGTCTTTTGGGCAGATGCAAGATCAAGGACAGAATACAGTCATTTTGGTGATGCAGTTCATCTGGACACAACATACAGAGTAAATCAGTACAGAGTTCCATTTGCTGCTTTTACAGGGGTAAACCATCATGGTCAGATGGTTTTGTTTGGTTGTGCACTCCTTTTGGATGATTCTGAGGCATCTTTTTTGTGGCTCTTTAAGACATTTCTCACAGCAATGAATGATCGCCAGCCTGTCTCTATAATTACTGATCAAGACGGAGCCATACAGGCAGCAGTTTCACAAGTTTTTCCACAAGCTCGCCACTGTATTAGCAAGTGGGATGTCTTGAGAGACGGCCAGGAAAAGTTGGGCCATGTATGTCTTGCACATCCAAATTTTCAGGTTGAACTTTATAACTGTATCAACCTGACTGAAACTATTGAGGAGTTTGAGTCATCTTGGAATTCTATCCTTGATAAATATGAACTCAGAAGAAATGAATGGCTTCAAGAATTGTATAATGGTCGTGCTCAATGGGTTCCAGCATACTTCCGTGATTCATTTTTTGCTGCAATATCTCCTAATCAAGGATTTGACTGTTCTTTATTTGATGGTTATGTCAACCAACAGACGACATTGCCATTGTTCTTTAGGCAGTATGAAATAGCTTTAGAGAGCTGGATTGAAAAGGAAATAGAAGCAGATTTTGAGACGATTTGCACAACACCAGTTTTGAAGACACCTTCACCGATGGAGAAGCAGGTCGCTAACCTTTATACAAGAAAAATATTTTCGAAGTTTCAGGAAGAGCTAGTTGAAACTTTTGTTTATACTGCAAATACAGTTGAAGGAGATGGGACAAATAGCACATTCAGGGTTGCAAAATTTGAGGATGACCAAAAGGCATACATTGTCACATTAAACCATGCTGAGTTGAGAGCTAACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGCAGGCATATTTTAACTGTTTTCACCGTGACAAATGTACTTACATTACCACCTCATTACATCTTAAAACGGTGGACAAAAAATGCTAAAAGTAGTGTCGGGTCNGATGAACGGACTGGTGAATCACATGGACAGGAGTCTCTGACGTCGAGGTATAACAATCTATGTCGGGAAGCCATCAGATATGCTGAGGAAGGGGCAGTATCCGTGGAAACTTATAATGCTGCAATGAGTGGTCTTAGAGAAGGTGGGAAGAAGGTTACTGCTATGAAAAAAAGTGTTGCCAAAGTTGCACCTCCTAAGAATAAGGTCAGTGGGACTGCTGACAGAAAAACTACTACTTCAACTTTGGATACAACTCCTCTTTTGTGGCCCCGGCAAGATGAAATAACAAGGAGGTTTAATCTGAATGATGCTGGTGGTCCAGTTCAATCAGTTGCTGACCGAAATTTGCCACGAATGGCCCCGGTGTCTCTTCATCGAGATGATGGTCAATCTGAAAACATGGTAGTTCTTCCATGCCTAAAATCGATGACATGGGTAATGGAGAAGAAAAACTCAAATCCAGGGAATAAAGTAGCTGTTATCAATCTGAAGTTGCAAGATTATAGCAGGACTCCGTCAACCGAATCTGATGTTAAGTTTCAGCTGTCAAGAGTTTCTTTGGAACCAATGTTGAAGTCTATGGCTTACATCAGTGAACAGCTCTCAAGACCAGCTAATAAGGTTGCTGTAATAAATCTCAAGCTTCAAGATACCGAGACAACTTCTGGTGAGTCTGAAGTTAAGTTTCAGGTGTCCAGGGATACATTGGGTGCCATGCTACGATCAATGGCCTATATCCGTGAGCAACTATCTTATGCTGTAAGTGTTTTGTTCCTGTTATCTCTATGCACAGGATGCATGGGTTATAAAATTTATTATAATTTATATAGGCTTCTTTTTCTTTTATATTATTTTGCTGTGTGTGTGTGTGATAATGCTTCATCAACTACCCAGTCC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00203	71490	76420	+

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000203s00012886.1	PF03101.10	FAR1	62	134	1.90E-12
Glyur000203s00012886.1	PF10551.4	MULE	280	367	4.80E-21
Glyur000203s00012886.1	PF04434.12	SWIM	561	587	1.10E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.639
SRR1783600	control	9.707
SRR1783602	moderate drought stress	9.852
SRR1811619	moderate drought stress	9.926

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.563
DRR006520	Root Summer glycyrrhizin high producing strain	12.217
DRR006521	Root Winter glycyrrhizin high producing strain	12.266
DRR006522	Root Winter glycyrrhizin high producing strain	11.722
DRR006523	Root Summer glycyrrhizin low producing strain	16.492
DRR006524	Root Summer glycyrrhizin low producing strain	16.470
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.322
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.442

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	18.380
SRR2868004	Drought Stress(Tissue:root)	20.424
SRR2967015	Control (Tissue:root)	23.237

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	16.171
SRR9715740	Leave	18.132
SRR9715741	Leave	23.387
SRR9715739	Root	1.555
SRR9715742	Root	11.795
SRR9715743	Root	10.678

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.931
SRR8749028	MeJA induced 9h	18.203
SRR8749029	MeJA induced 9h	7.510
SRR8749030	Uninduced	9.323
SRR8749031	Uninduced	7.320
SRR8749032	Uninduced	6.150

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	16.456
SRR8400027	Control-Root	16.471