Gene detail information of Glyur000203s00012890.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G45140.10lipoxygenase 2
NRXP_003519005.10PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic [Glycine max]
Swissprottr|O24370|LOX21_SOLTU0Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBLtr|I1JFT4|I1JFT4_SOYBN0Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002038958397344-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00454LOX2S EC:1.13.11.12 Linoleic acid metabolism map00591
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000203s00012890.1PF00305.14Lipoxygenase1187785.30E-267


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.129
SRR1783600control0.124
SRR1783602moderate drought stress0.127
SRR1811619moderate drought stress0.141

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.044
DRR006520Root Summer glycyrrhizin high producing strain0.043
DRR006521Root Winter glycyrrhizin high producing strain0.091
DRR006522Root Winter glycyrrhizin high producing strain0.088
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain71.368
DRR006526Leaf Summer glycyrrhizin high producing strain70.563

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.284
SRR2868004Drought Stress(Tissue:root)0.375
SRR2967015Control (Tissue:root)0.331

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave45.522
SRR9715740Leave51.647
SRR9715741Leave48.565
SRR9715739Root0.000
SRR9715742Root0.127
SRR9715743Root0.200

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.029
SRR8749028MeJA induced 9h0.082
SRR8749029MeJA induced 9h0.025
SRR8749030Uninduced0.000
SRR8749031Uninduced0.015
SRR8749032Uninduced0.070

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.095
SRR8400027Control-Root0.115

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved