Gene detail information of Glyur000203s00012900.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G76490.10hydroxy methylglutaryl CoA reductase 1
NRXP_003519474.10PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Glycine max]
COGNP_126055.12.00E-1133-hydroxy-3-methylglutaryl-coenzyme A reductase [Pyrococcus abyssi GE5]
Swissprottr|P29057|HMDH1_HEVBR03-hydroxy-3-methylglutaryl-coenzyme A reductase 1
trEMBLtr|I1JIP4|I1JIP4_SOYBN03-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00203183916187560-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00021HMGCR EC:1.1.1.34 Terpenoid backbone biosynthesis map00900
AMPK signaling pathwaymap04152
Bile secretionmap04976


Gene Ontology

biological_process

GO:0008299  isoprenoid biosynthetic process

GO:0015936  coenzyme A metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0004420  hydroxymethylglutaryl-CoA reductase (NADPH) activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0050661  NADP binding

GO:0050662  coenzyme binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000203s00012900.1PF00368.13HMG-CoA_red2416131.50E-154


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.463
SRR1783600control11.437
SRR1783602moderate drought stress5.238
SRR1811619moderate drought stress5.267

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.764
DRR006520Root Summer glycyrrhizin high producing strain11.758
DRR006521Root Winter glycyrrhizin high producing strain1.094
DRR006522Root Winter glycyrrhizin high producing strain1.216
DRR006523Root Summer glycyrrhizin low producing strain6.546
DRR006524Root Summer glycyrrhizin low producing strain6.952
DRR006525Leaf Summer glycyrrhizin high producing strain5.770
DRR006526Leaf Summer glycyrrhizin high producing strain5.963

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.954
SRR2868004Drought Stress(Tissue:root)27.053
SRR2967015Control (Tissue:root)37.723

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.018
SRR9715740Leave8.512
SRR9715741Leave16.158
SRR9715739Root29.220
SRR9715742Root55.195
SRR9715743Root47.755

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.251
SRR8749028MeJA induced 9h1.220
SRR8749029MeJA induced 9h0.596
SRR8749030Uninduced0.082
SRR8749031Uninduced0.000
SRR8749032Uninduced0.048

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root36.436
SRR8400027Control-Root36.574

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved