Gene detail information of Glyur000203s00012910.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G17920.20Cobalamin-independent synthase family protein
NRXP_004502016.10PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Cicer arietinum]
COGYP_744604.105-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [Granulibacter bethesdensis CGDNIH1]
Swissprottr|O50008|METE1_ARATH05-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1
trEMBLtr|I1LXY1|I1LXY1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G15140.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00203239865245169+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00549metE EC:2.1.1.14 Biosynthesis of amino acids map01230
Cysteine and methionine metabolismmap00270
Selenocompound metabolismmap00450


Gene Ontology

biological_process

GO:0008652  cellular amino acid biosynthetic process

GO:0009086  methionine biosynthetic process


molecular_function

GO:0003871  5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000203s00012910.2PF08267.7Meth_synt_1113232.10E-115
Glyur000203s00012910.2PF01717.13Meth_synt_24407631.40E-147


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control159.860
SRR1783600control160.664
SRR1783602moderate drought stress187.926
SRR1811619moderate drought stress187.595

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain368.286
DRR006520Root Summer glycyrrhizin high producing strain364.080
DRR006521Root Winter glycyrrhizin high producing strain108.057
DRR006522Root Winter glycyrrhizin high producing strain105.632
DRR006523Root Summer glycyrrhizin low producing strain283.138
DRR006524Root Summer glycyrrhizin low producing strain282.668
DRR006525Leaf Summer glycyrrhizin high producing strain73.828
DRR006526Leaf Summer glycyrrhizin high producing strain73.836

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)153.895
SRR2868004Drought Stress(Tissue:root)161.142
SRR2967015Control (Tissue:root)154.496

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave74.087
SRR9715740Leave82.161
SRR9715741Leave82.139
SRR9715739Root453.914
SRR9715742Root324.366
SRR9715743Root344.664

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h107.338
SRR8749028MeJA induced 9h145.467
SRR8749029MeJA induced 9h72.170
SRR8749030Uninduced35.528
SRR8749031Uninduced10.683
SRR8749032Uninduced19.519

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root233.953
SRR8400027Control-Root213.586

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved