Gene detail information of Glyur000203s00012913.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G20950.21.00E-178Glycosyl hydrolase family protein
NRXP_003601350.10Beta-D-glucosidase [Medicago truncatula]
COGYP_003291877.19.00E-125glycoside hydrolase [Rhodothermus marinus DSM 4252]
Swissprottr|A5JTQ3|XYL2_MEDSV2.00E-26Alpha-L-arabinofuranosidase (Precursor)
trEMBLtr|G7J6L9|G7J6L9_MEDTR0Glycoside hydrolase family 3 protein {ECO:0000313|EMBL:AES71601.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00203254809258816+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH3


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05349bglX EC:3.2.1.21 Starch and sucrose metabolism map00500
Cyanoamino acid metabolismmap00460
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000203s00012913.1PF00933.16Glyco_hydro_3473352.30E-65
Glyur000203s00012913.1PF01915.17Glyco_hydro_3_C3734408.30E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.013
SRR1783600control3.565
SRR1783602moderate drought stress2.876
SRR1811619moderate drought stress2.819

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.710
DRR006520Root Summer glycyrrhizin high producing strain3.412
DRR006521Root Winter glycyrrhizin high producing strain0.039
DRR006522Root Winter glycyrrhizin high producing strain0.076
DRR006523Root Summer glycyrrhizin low producing strain0.242
DRR006524Root Summer glycyrrhizin low producing strain0.310
DRR006525Leaf Summer glycyrrhizin high producing strain6.480
DRR006526Leaf Summer glycyrrhizin high producing strain7.026

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.548
SRR2868004Drought Stress(Tissue:root)6.275
SRR2967015Control (Tissue:root)7.811

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.130
SRR9715740Leave4.601
SRR9715741Leave2.941
SRR9715739Root2.412
SRR9715742Root1.345
SRR9715743Root1.353

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.117
SRR8749029MeJA induced 9h0.085
SRR8749030Uninduced0.072
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.399
SRR8400027Control-Root13.665

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved