Gene detail

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Gene detail information of Glyur000204s00012394.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47870.1	2.00E-41	LOB domain-containing protein 27
NR	XP_007155357.1	1.25E-148	hypothetical protein PHAVU_003G194300g [Phaseolus vulgaris]
Swissprot	tr\|Q9STS6\|LBD27_ARATH	1.00E-51	LOB domain-containing protein 27
trEMBL	tr\|V7CEM2\|V7CEM2_PHAVU	5.00E-149	Uncharacterized protein {ECO:0000313\|EMBL:ESW27351.1}

Sequence

Transcript Sequence

>Glyur000204s00012394.1
ATGGATTCTTCTAGCGTCTTGCAGCTGGGTAGTAGTGGGGGAAATATGACCTTTAAGGCCTGTGCAGCATGCAAATACCAGAGAAGACAGTGCACTCCTGAGTGCATTTTAGCTCCTTACTTCCCTGGTGACCAACCCAAGACATTCCTTAATGTCCACAAACTATTTGGGATTAGCAACGTCATCAAGATATTAAAGATGTTGGAGCCTAGNAAGAAGAAAATAGCCATGGACTCTGTCATTGTTCAGGCAAATTGTAGGGAAAAGTACCCTGTTCATGGCTGTTTGGGTGAAATCTGTAGGCTACAGAACCAAATAAGGATGGTGGAAGAAGAGCTTCATGTTGTTCATCAACAACTTAAGATGTGCAAGCAACAACAACAACACAAGCATGATCAAGACACATCCTTGCATGATGATGTGGCTTCACAATTGGAATTGGGAATGGCCCCACATACCAATAACAACATTTCACAGAAACATTCCTACTCCAACAGCAGCAACAGCATGGATTATAGCCCCTTGTTAGTGGAGTCCAAGGATAATAACACCACAAATCCTCTGTGGCTTCAGTACCTTTACCCAAATAACAAAAGCAAGTCAATGGCAATGAAAACTAGGAATCTCAGTTGTTGTGTGTGGAATTTCACTTTTTTGGGTTCCAGCATCTTACTGGGTGGTGGAAATATGACCCTTAAAGGTGGCACAACCCAGGCCTGTGCGGCATGCAAATACCAGAGAAGAAAGTGCACTCCAGAGTGCCCCTTAGCCCCTTACTTCCCTGCAGACCAACCCAAGATATTTCTCAATGTCCACAAGCTATTTGGGGTCAGCAACATTGGGAAGATATTAAAGATCTTGGAGCCTAGTCAGAAGAAAATAGCCATGGACTCTATCATCATTCAGGCTAATTATAGGGACAAGTACCCTGTACATGGCTGCTGGGAAGAAATCTGCAGGCTACAGTACCAGATATGGCTGGTGGAAGAAGAGCTTCATGCTGTTTATCAACAGCTTGAGATGTGCAGGCAACAACACCAACAGCATCAGGGCACATCCTTGCCTGATGATGTGACTTCACAATTAGAATTGGGAATGGGAATGGCTCCACGTGCCAATAATGCCCTCCCACTCTTTAACCACACTCCACAGACTAATTACAACACAGTGCCTGCTATGTCTGTATCACAGCAACATTCCTACTCCAACAGCAACAGTGTGGATTATAGCNCCCTGTACATGGATTCCAAGGATAACACCACAAATCCTCTGTGGCTTCAGCACCCTTACCCAAATANCAATAGCAATTCAATAGCAACGCAAACTCAGTTGGTTGCCTCACAGCCACTGGCTGTCCAACATGAAGTTGGTGAAGATTATGATGAGATGCATCCATTTTTTGATACAGTTGATGATAGGCAATCATACATTTATTCCAAGGAGGCTTATGAATCAAGTTCAGAAGAATCATTGAAAGATACGAGAAAGTGCAATGAGCATGTTTCTGAGAATGAACTGAAGAGTGCTGCTGCATGCTTCAGCCTTACCAGTGTCAACTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00204	16105	19961	-

Gene family

Gene family	subfamily
Transcription Factors Family	LOB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000204s00012394.1	PF03195.9	DUF260	20	120	5.50E-35
Glyur000204s00012394.1	PF03195.9	DUF260	239	338	6.50E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.071
SRR1783600	control	0.094
SRR1783602	moderate drought stress	0.050
SRR1811619	moderate drought stress	0.091

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.207
DRR006520	Root Summer glycyrrhizin high producing strain	0.201
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.070
DRR006524	Root Summer glycyrrhizin low producing strain	0.070
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.405
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.320

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.095
SRR2868004	Drought Stress(Tissue:root)	0.001
SRR2967015	Control (Tissue:root)	0.030

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.043
SRR9715740	Leave	0.140
SRR9715741	Leave	0.097
SRR9715739	Root	0.031
SRR9715742	Root	0.040
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.138
SRR8749029	MeJA induced 9h	0.039
SRR8749030	Uninduced	0.041
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.104
SRR8400027	Control-Root	0.106