Gene detail information of Glyur000204s00012396.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32290.1 | 0 | beta-amylase 6 |
| NR | XP_003540325.2 | 0 | PREDICTED: beta-amylase-like [Glycine max] |
| COG | YP_004639885.1 | 3.00E-50 | thermophilic beta-amylase [Paenibacillus mucilaginosus KNP414] |
| Swissprot | tr|O22585|AMYB_MEDSA | 0 | Beta-amylase |
| trEMBL | tr|K7LVY9|K7LVY9_SOYBN | 0 | Beta-amylase {ECO:0000256|RuleBase:RU000509} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00204 | 26006 | 27718 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH14 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000204s00012396.1 | PF01373.12 | Glyco_hydro_14 | 86 | 499 | 1.60E-111 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.170 |
| SRR1783600 | control | 0.164 |
| SRR1783602 | moderate drought stress | 0.172 |
| SRR1811619 | moderate drought stress | 0.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.380 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.377 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.174 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.157 |
| SRR2967015 | Control (Tissue:root) | 0.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.001 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.352 |
| SRR8749028 | MeJA induced 9h | 0.313 |
| SRR8749029 | MeJA induced 9h | 0.640 |
| SRR8749030 | Uninduced | 0.446 |
| SRR8749031 | Uninduced | 0.134 |
| SRR8749032 | Uninduced | 0.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.020 |
| SRR8400027 | Control-Root | 0.020 |