Gene detail information of Glyur000204s00012397.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G47890.10Ubiquitin carboxyl-terminal hydrolase-related protein
NRXP_004508792.10PREDICTED: uncharacterized protein LOC101496590 isoform X2 [Cicer arietinum]
Swissprottr|Q9FPS4|UBP23_ARATH8.00E-06Ubiquitin carboxyl-terminal hydrolase 23
trEMBLtr|V7CDI7|V7CDI7_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW27350.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002043902560867-


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0005515  protein binding

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000204s00012397.2PF04781.7DUF627761899.10E-15
Glyur000204s00012397.2PF04780.7DUF6293498807.80E-117
Glyur000204s00012397.2PF00443.24UCH133516474.70E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.276
SRR1783600control19.447
SRR1783602moderate drought stress20.730
SRR1811619moderate drought stress22.612

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.644
DRR006520Root Summer glycyrrhizin high producing strain16.469
DRR006521Root Winter glycyrrhizin high producing strain17.594
DRR006522Root Winter glycyrrhizin high producing strain16.031
DRR006523Root Summer glycyrrhizin low producing strain15.978
DRR006524Root Summer glycyrrhizin low producing strain15.969
DRR006525Leaf Summer glycyrrhizin high producing strain13.332
DRR006526Leaf Summer glycyrrhizin high producing strain13.453

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.789
SRR2868004Drought Stress(Tissue:root)29.343
SRR2967015Control (Tissue:root)30.881

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.468
SRR9715740Leave18.291
SRR9715741Leave19.308
SRR9715739Root2.974
SRR9715742Root28.067
SRR9715743Root25.425

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.800
SRR8749028MeJA induced 9h15.377
SRR8749029MeJA induced 9h5.025
SRR8749030Uninduced8.431
SRR8749031Uninduced5.974
SRR8749032Uninduced4.723

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.881
SRR8400027Control-Root31.426

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved