Gene detail information of Glyur000204s00012402.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G47950.10H(+)-ATPase 4
NRKGN64262.10hypothetical protein Csa_1G045600 [Cucumis sativus]
COGYP_564839.14.00E-92plasma-membrane proton-efflux P-type ATPase [Methanococcoides burtonii DSM 6242]
Swissprottr|Q9SU58|PMA4_ARATH0ATPase 4, plasma membrane-type
trEMBLtr|A0A0A0LU01|A0A0A0LU01_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN64262.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00204111092117758+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01535PMA1, PMA2 EC:3.6.3.6 Oxidative phosphorylation map00190


Gene Ontology

cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0000166  nucleotide binding

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000204s00012402.1PF00690.21Cation_ATPase_N21844.00E-14
Glyur000204s00012402.1PF00122.15E1-E2_ATPase1382022.00E-14
Glyur000204s00012402.1PF00702.21Hydrolase2353702.10E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control48.798
SRR1783600control48.933
SRR1783602moderate drought stress59.063
SRR1811619moderate drought stress58.218

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain58.169
DRR006520Root Summer glycyrrhizin high producing strain56.865
DRR006521Root Winter glycyrrhizin high producing strain58.906
DRR006522Root Winter glycyrrhizin high producing strain57.154
DRR006523Root Summer glycyrrhizin low producing strain43.779
DRR006524Root Summer glycyrrhizin low producing strain43.863
DRR006525Leaf Summer glycyrrhizin high producing strain88.945
DRR006526Leaf Summer glycyrrhizin high producing strain88.304

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)123.069
SRR2868004Drought Stress(Tissue:root)108.423
SRR2967015Control (Tissue:root)137.094

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave94.189
SRR9715740Leave106.477
SRR9715741Leave70.468
SRR9715739Root34.724
SRR9715742Root82.455
SRR9715743Root73.351

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h36.853
SRR8749028MeJA induced 9h33.687
SRR8749029MeJA induced 9h21.683
SRR8749030Uninduced15.408
SRR8749031Uninduced9.566
SRR8749032Uninduced11.781

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root107.218
SRR8400027Control-Root104.776

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved