Gene detail information of Glyur000204s00012408.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G01470.15.00E-36homeobox 1
NRXP_003524980.11.61E-134PREDICTED: homeobox-leucine zipper protein HAT5-like [Glycine max]
Swissprottr|Q02283|HAT5_ARATH1.00E-41Homeobox-leucine zipper protein HAT5
trEMBLtr|I1JZS9|I1JZS9_SOYBN6.00E-135Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G01390.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00204165857168412-


Gene family

Gene familysubfamily
Transcription Factors FamilyHB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000204s00012408.1PF00046.24Homeobox981511.00E-16
Glyur000204s00012408.1PF02183.13HALZ1531907.10E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control65.808
SRR1783600control65.747
SRR1783602moderate drought stress95.640
SRR1811619moderate drought stress94.418

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain68.443
DRR006520Root Summer glycyrrhizin high producing strain67.679
DRR006521Root Winter glycyrrhizin high producing strain358.982
DRR006522Root Winter glycyrrhizin high producing strain348.577
DRR006523Root Summer glycyrrhizin low producing strain64.512
DRR006524Root Summer glycyrrhizin low producing strain64.325
DRR006525Leaf Summer glycyrrhizin high producing strain48.586
DRR006526Leaf Summer glycyrrhizin high producing strain47.781

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)212.316
SRR2868004Drought Stress(Tissue:root)349.686
SRR2967015Control (Tissue:root)278.390

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave98.874
SRR9715740Leave151.119
SRR9715741Leave114.990
SRR9715739Root167.924
SRR9715742Root176.791
SRR9715743Root176.534

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h55.212
SRR8749028MeJA induced 9h136.326
SRR8749029MeJA induced 9h53.335
SRR8749030Uninduced135.764
SRR8749031Uninduced24.492
SRR8749032Uninduced31.160

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root239.016
SRR8400027Control-Root172.633

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved