Gene detail information of Glyur000204s00012422.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G02760.14.00E-86ubiquiting-conjugating enzyme 2
NRKEH19791.11.53E-109ubiquitin-conjugating enzyme [Medicago truncatula]
COGYP_008797956.11.00E-16ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P42745|UBC2_ARATH7.00E-110Ubiquitin-conjugating enzyme E2 2
trEMBLtr|A0A072TRF9|A0A072TRF9_MEDTR6.00E-110Ubiquitin-conjugating enzyme {ECO:0000313|EMBL:KEH19791.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00204229005231983+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10573UBE2A, UBC2, RAD6A EC:2.3.2.23 Ubiquitin mediated proteolysis map04120


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000204s00012422.1PF00179.21UQ_con81443.40E-52


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control98.249
SRR1783600control98.676
SRR1783602moderate drought stress102.381
SRR1811619moderate drought stress100.511

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain152.891
DRR006520Root Summer glycyrrhizin high producing strain149.298
DRR006521Root Winter glycyrrhizin high producing strain152.083
DRR006522Root Winter glycyrrhizin high producing strain149.747
DRR006523Root Summer glycyrrhizin low producing strain161.409
DRR006524Root Summer glycyrrhizin low producing strain163.051
DRR006525Leaf Summer glycyrrhizin high producing strain76.451
DRR006526Leaf Summer glycyrrhizin high producing strain76.444

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)148.305
SRR2868004Drought Stress(Tissue:root)160.177
SRR2967015Control (Tissue:root)168.068

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave138.098
SRR9715740Leave142.739
SRR9715741Leave149.585
SRR9715739Root122.305
SRR9715742Root89.363
SRR9715743Root97.699

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h72.446
SRR8749028MeJA induced 9h53.699
SRR8749029MeJA induced 9h82.687
SRR8749030Uninduced58.752
SRR8749031Uninduced67.357
SRR8749032Uninduced74.581

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root130.157
SRR8400027Control-Root133.239

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved