Gene detail information of Glyur000205s00012956.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G23140.15.00E-106nuclear-encoded CLP protease P7
NRAFK44268.14.48E-151unknown [Lotus japonicus]
COGYP_032181.17.00E-94ATP-dependent Clp protease proteolytic subunit [Bartonella quintana str. Toulouse]
Swissprottr|Q9FN42|CLPP2_ARATH1.00E-141ATP-dependent Clp protease proteolytic subunit 2, mitochondrial (Precursor)
trEMBLtr|I3SVH6|I3SVH6_LOTJA2.00E-151ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00205202084207581+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01358clpP, CLPP EC:3.4.21.92 Cell cycle - Caulobacter map04112
Longevity regulating pathway - wormmap04212


Gene Ontology

biological_process

GO:0006508  proteolysis


molecular_function

GO:0004252  serine-type endopeptidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000205s00012956.1PF00574.18CLP_protease442244.70E-79


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.576
SRR1783600control34.715
SRR1783602moderate drought stress42.982
SRR1811619moderate drought stress42.604

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain50.323
DRR006520Root Summer glycyrrhizin high producing strain49.808
DRR006521Root Winter glycyrrhizin high producing strain51.585
DRR006522Root Winter glycyrrhizin high producing strain50.662
DRR006523Root Summer glycyrrhizin low producing strain58.440
DRR006524Root Summer glycyrrhizin low producing strain58.022
DRR006525Leaf Summer glycyrrhizin high producing strain28.347
DRR006526Leaf Summer glycyrrhizin high producing strain28.446

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.946
SRR2868004Drought Stress(Tissue:root)38.201
SRR2967015Control (Tissue:root)40.321

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave32.308
SRR9715740Leave31.179
SRR9715741Leave32.834
SRR9715739Root73.966
SRR9715742Root45.682
SRR9715743Root49.891

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h91.835
SRR8749028MeJA induced 9h52.606
SRR8749029MeJA induced 9h59.339
SRR8749030Uninduced29.990
SRR8749031Uninduced20.312
SRR8749032Uninduced30.991

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root49.363
SRR8400027Control-Root42.708

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved