Gene detail information of Glyur000206s00012562.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G41900.10CCCH-type zinc finger protein with ARM repeat domain
NRXP_004493518.10PREDICTED: zinc finger CCCH domain-containing protein 30-like [Cicer arietinum]
Swissprottr|P93755|C3H30_ARATH0Zinc finger CCCH domain-containing protein 30
trEMBLtr|A2Q3L5|A2Q3L5_MEDTR0Zinc finger, CCCH-type {ECO:0000313|EMBL:ABN08215.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0020659258138+


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000206s00012562.1PF12796.2Ank_21181792.00E-07
Glyur000206s00012562.1PF00642.19zf-CCCH3123327.60E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control67.539
SRR1783600control66.727
SRR1783602moderate drought stress55.613
SRR1811619moderate drought stress58.047

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain67.854
DRR006520Root Summer glycyrrhizin high producing strain66.859
DRR006521Root Winter glycyrrhizin high producing strain39.254
DRR006522Root Winter glycyrrhizin high producing strain38.040
DRR006523Root Summer glycyrrhizin low producing strain78.686
DRR006524Root Summer glycyrrhizin low producing strain77.693
DRR006525Leaf Summer glycyrrhizin high producing strain20.039
DRR006526Leaf Summer glycyrrhizin high producing strain20.209

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.168
SRR2868004Drought Stress(Tissue:root)55.649
SRR2967015Control (Tissue:root)61.664

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.745
SRR9715740Leave30.861
SRR9715741Leave31.703
SRR9715739Root75.404
SRR9715742Root83.382
SRR9715743Root78.890

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.650
SRR8749028MeJA induced 9h30.057
SRR8749029MeJA induced 9h21.823
SRR8749030Uninduced18.262
SRR8749031Uninduced6.270
SRR8749032Uninduced7.138

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root40.755
SRR8400027Control-Root41.143

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved