Gene detail information of Glyur000206s00012580.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G44200.11.00E-87NIMA (never in mitosis, gene A)-related 6
NRXP_006604372.11.21E-140PREDICTED: serine/threonine-protein kinase Nek6-like [Glycine max]
COGYP_007163221.17.00E-23serine/threonine protein kinase with pentapeptide repeats [Cyanobacterium aponinum PCC 10605]
Swissprottr|Q9LT35|NEK6_ARATH1.00E-103Serine/threonine-protein kinase Nek6
trEMBLtr|I1N937|I1N937_SOYBN4.00E-141Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G32470.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00206108010114000-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.1.6


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000206s00012580.1PF00069.20Pkinase162141.20E-50


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.932
SRR1783600control13.101
SRR1783602moderate drought stress12.727
SRR1811619moderate drought stress12.601

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.307
DRR006520Root Summer glycyrrhizin high producing strain18.361
DRR006521Root Winter glycyrrhizin high producing strain2.985
DRR006522Root Winter glycyrrhizin high producing strain2.932
DRR006523Root Summer glycyrrhizin low producing strain15.595
DRR006524Root Summer glycyrrhizin low producing strain15.680
DRR006525Leaf Summer glycyrrhizin high producing strain14.826
DRR006526Leaf Summer glycyrrhizin high producing strain14.837

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)35.978
SRR2868004Drought Stress(Tissue:root)34.023
SRR2967015Control (Tissue:root)28.950

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.925
SRR9715740Leave14.462
SRR9715741Leave18.816
SRR9715739Root1.447
SRR9715742Root11.049
SRR9715743Root10.113

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.930
SRR8749028MeJA induced 9h4.732
SRR8749029MeJA induced 9h1.578
SRR8749030Uninduced1.135
SRR8749031Uninduced0.277
SRR8749032Uninduced0.361

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.436
SRR8400027Control-Root32.730

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved