Gene detail

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Gene detail information of Glyur000206s00012585.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06940.1	0	Leucine-rich repeat receptor-like protein kinase family protein
NR	KHN26349.1	0	Probably inactive leucine-rich repeat receptor-like protein kinase [Glycine soja]
COG	YP_004775215.1	3.00E-47	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9FL51\|Y5694_ARATH	0	Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 (Precursor)
trEMBL	tr\|I1N939\|I1N939_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G32510.1}

Sequence

Transcript Sequence

>Glyur000206s00012585.1
ATGGCTACTTTCTGTACATACCTATTCCTTCTCTCTGTGACCTTTCCAATCTTCATCAATCTCAGTTCATCTTCATCAGAAGGGGATATCCTTCTCTCCTTCAAGGACTCCATTGAAGACTCCTCAAAGAAGGCCTTGTCTAGCTGGTCAAACACTTCATCAAACCACTACTGTAACTGGACTGGAATCTCCTGCAGCTCCTCCACCAAAACACCTCCAGTACTCTCAGTCACTTCTATCAATCTTCAGAGCTTAAACCTTTCTGGTGACATCTCATCTTCTATATGTGACCTTCCAAATCTGTCTCATCTCAACCTTGCTGATAACATCTTCAACCAACCCATCCCTCTTCATCTCTCTCAGTGTAGTTCCTTGCAGACTTTGAATCTCAGCACCAATCTCATATGGGGCACTATCCCATCNCAGGTTTCTCAGTTTTCTTCCCTGAGAGTTCTTGATTTGAGCAGGAACCATATAGAGGGAAACATCCCAGAAAGCTTAGGCTCCTTGAAGAACCTTCAAGTCCTTAACATGGGAAGCAACTTGCTGTCAGGTAATGTACCAGCTGTGTTTGGGAATTTATCTAAGCTTGAGGTGCTTGATTTGTCTCAGAATCCATACTTGGTGAGTGAGATTCCAGAGGATATCGGTGAACTTGGGAATCTGAAGCAACTTCTGCTGCAGAGTTCTTCTTTCCAAGGTGAAATTCCTGAGTCTTTGGTGGGACTGCTTAGCTTGACTCATTTGGATCTCTCTGAGAACAATCTAACAGGTGGGGTTCCTAAGGCTCTTGTATCTTCTCTCAAGAACCTGGTTTCTTTTGATGTCTCACAGAACAAGCTTNTGGGGCCATTTCCAAGTGGTGTGTGTAAAGGACAAGGGCTTATAAATCTCAGCCTCCACACAAACACCTTCACAGGTCCAATACCAAACTCCATTGGTGACTGTAAGAGCCTTGAGAGGTTCCAAGTTCAGAACAATGGTTTCTCTGGTGATTTCCCCATTGGGTTGTGGTCACTACCAAAAGTCAAGCTCATTAGAGCTGAAAACAACAGGTTCTCAGGACAAATACCTGAATCAATATCAGGAGCTTCTCAGTTGGAGCAAGTTCAGCTTGACAACAACACCTTTGCTGGTAAAATCCCTCAAGGTCTTGGCTTTGTCAAGAGTTTATACAGATTCTCAGCTTCTCTCAACAGTTTCTATGGTGAACTCCCTCCTAATTTCTGTGACTCCCCAGTTATGAGCATAGTGAACCTCTCTCACAATTCTCTTTCTGGTAAAATCCCAGAGCTGAGAAAATGCAGGAAACTAGTTTCACTGTCTTTGGCTGACAACAGCCTAACAGGAGAAATCCCTCCTTCCTTTGCTGAACTACCTGTGCTGACTTACCTTGATCTTTCAGATAACAATCTCACTGGTTCAATCCCACAAGGGCTTCAAAACTTGAAGCTTGCACTTTTCAATGTGTCNTTCAATCAGCTTTCAGGTAAAGTACCATACTCATTGATTTCTGGTCTCCCTGCGTCATTTTTGGAAGGAAACCCTGGTCTTTGTGGTCCTGGATTGCCCAACTCATGTTCGGATGANCCCCCAAGACACCACCGTGTTGGTGGTCTTACAACCTTAACATGTGCATTGATCTCTTTAGCCTTTGTTGCTGGAACTGCAATTGTTGTTGGTGGATTCATACTGTATAGGAGATCTTGCAAGGGGAGTCAAGTTGGGGTTTGGAGATCAGTGTTCTTCTATCCTCTCAGAATTACCGAGCATGATCTACTTATAGGGATGAATGAGAAAAGCTCAGTGGGGAATGGTGGAGTTTTTGGCAAGGTTTATGTTGTGAGTTTACCTAGTGGTGAACTAGTATCTGTGAAGAAGCTGGTCAATTTTGGAAACCAGTCTTCAAGAAGTTTGAAAAGTGAAGTCAAGACTTTGGCAAAGATTAGGCACAAGAATGTTGTTAAGATTCTGGGGTTCTGCCATTCTGATGAGTCAGTTTTTCTCATCTATGAGTACTTGCATGGAGGAAGCTTAGGGGATTTGATTTCTAGTCAGAATTTTCAGTTGCAGTGGGGAGTTAGATTAAAGATTGCCATTGGAGTTGCTCAAGGACTGGCATATCTTCACAAGGATTATGTGCCACACTTGCTTCACAGGAATGTCAAGTCAAAGAACATTCTGTTGGATGCAAACTTTGAGCCAAAGCTGACACATTTTGCTCTTGATCGGATTGTGGGAGAAGCTGCATTTCAATCAACTTTGGATTCTGAGGCAGCATCTTCCTGTTNCATTGCACCAGAATATGGTTACAGTAAGAAAGCAACTGAGCAATTGGACGTGTACAGCTTTGGTGTTGTATTGCTAGAGCTAGTTTGTGGGAGGCAAGCAGAGGAAACAGATTCAACAAATGAGTCCATTGACATTGTGAAGTGGGTAAGAAGGAAAGTGAACATCACCAATGGGGTACACCAAGTTCTTGACACTAGAATATTATCACATACTTGTCACCAACAAATGGTAGCAGCTTTAGATATTGCTCTTCGTTGCACTTCTGTGGTGCCTGAGAAAAGGCCACCAATGGTACAAGTTGTTAGGGGTCTTCAGTCCCTTGAATCAAGGGCTTGTGTTGCAGATNTGCAGGGTCCAAATGTGGAAGAGGAACCCTCCATTCCAGTCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00206	133085	136281	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000206s00012585.1	PF08263.7	LRRNT_2	25	66	6.80E-11
Glyur000206s00012585.1	PF13855.1	LRR_8	147	205	1.80E-09
Glyur000206s00012585.1	PF13855.1	LRR_8	221	281	2.20E-06
Glyur000206s00012585.1	PF12799.2	LRR_4	437	476	1.10E-07
Glyur000206s00012585.1	PF07714.12	Pkinase_Tyr	603	866	2.50E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.563
SRR1783600	control	17.347
SRR1783602	moderate drought stress	13.530
SRR1811619	moderate drought stress	13.251

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.929
DRR006520	Root Summer glycyrrhizin high producing strain	10.295
DRR006521	Root Winter glycyrrhizin high producing strain	0.457
DRR006522	Root Winter glycyrrhizin high producing strain	0.486
DRR006523	Root Summer glycyrrhizin low producing strain	4.328
DRR006524	Root Summer glycyrrhizin low producing strain	4.336
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.686
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.693

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	17.334
SRR2868004	Drought Stress(Tissue:root)	13.315
SRR2967015	Control (Tissue:root)	17.947

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.107
SRR9715740	Leave	3.328
SRR9715741	Leave	3.187
SRR9715739	Root	13.282
SRR9715742	Root	13.452
SRR9715743	Root	12.469

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.770
SRR8749028	MeJA induced 9h	0.910
SRR8749029	MeJA induced 9h	0.237
SRR8749030	Uninduced	0.071
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.019

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	24.505
SRR8400027	Control-Root	25.866