Gene detail information of Glyur000206s00012590.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57790.1 | 1.00E-169 | Pectin lyase-like superfamily protein |
| NR | XP_004493545.1 | 0 | PREDICTED: exo-poly-alpha-D-galacturonosidase-like [Cicer arietinum] |
| COG | YP_001195450.1 | 6.00E-75 | glycoside hydrolase [Flavobacterium johnsoniae UW101] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 8.00E-18 | Probable polygalacturonase |
| trEMBL | tr|I1N942|I1N942_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G32550.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00206 | 171455 | 174839 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000206s00012590.1 | PF00295.12 | Glyco_hydro_28 | 61 | 385 | 2.90E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.178 |
| SRR1783600 | control | 1.135 |
| SRR1783602 | moderate drought stress | 2.455 |
| SRR1811619 | moderate drought stress | 2.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.908 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.788 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.785 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.940 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.943 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.024 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.568 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.077 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.725 |
| SRR2967015 | Control (Tissue:root) | 28.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.900 |
| SRR9715740 | Leave | 9.707 |
| SRR9715741 | Leave | 13.168 |
| SRR9715739 | Root | 0.671 |
| SRR9715742 | Root | 3.261 |
| SRR9715743 | Root | 2.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.046 |
| SRR8749028 | MeJA induced 9h | 77.158 |
| SRR8749029 | MeJA induced 9h | 73.612 |
| SRR8749030 | Uninduced | 123.132 |
| SRR8749031 | Uninduced | 163.362 |
| SRR8749032 | Uninduced | 175.757 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.758 |
| SRR8400027 | Control-Root | 3.494 |