Gene detail information of Glyur000206s00012593.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57800.2 | 2.00E-75 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_007162273.1 | 0 | hypothetical protein PHAVU_001G138200g [Phaseolus vulgaris] |
| Swissprot | tr|Q3EAI1|BH060_ARATH | 6.00E-87 | Transcription factor bHLH60 |
| trEMBL | tr|V7CVR7|V7CVR7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW34267.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00206 | 179066 | 184312 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000206s00012593.1 | PF00010.21 | HLH | 202 | 249 | 5.60E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.979 |
| SRR1783600 | control | 0.984 |
| SRR1783602 | moderate drought stress | 1.516 |
| SRR1811619 | moderate drought stress | 1.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.743 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.364 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.909 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.852 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.509 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.548 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.797 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.011 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.225 |
| SRR2967015 | Control (Tissue:root) | 5.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 27.579 |
| SRR9715740 | Leave | 20.370 |
| SRR9715741 | Leave | 30.990 |
| SRR9715739 | Root | 0.422 |
| SRR9715742 | Root | 1.028 |
| SRR9715743 | Root | 1.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.275 |
| SRR8749028 | MeJA induced 9h | 1.926 |
| SRR8749029 | MeJA induced 9h | 2.094 |
| SRR8749030 | Uninduced | 1.352 |
| SRR8749031 | Uninduced | 0.601 |
| SRR8749032 | Uninduced | 1.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.852 |
| SRR8400027 | Control-Root | 2.593 |