Gene detail information of Glyur000207s00015893.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51500.1 | 4.00E-72 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | XP_003598225.1 | 7.34E-125 | Pectinesterase [Medicago truncatula] |
| COG | YP_004641919.1 | 4.00E-18 | pectinesterase [Paenibacillus mucilaginosus KNP414] |
| Swissprot | tr|Q9FHN4|PME60_ARATH | 2.00E-86 | Pectinesterase 60 (Precursor) |
| trEMBL | tr|G7IYH9|G7IYH9_MEDTR | 3.00E-125 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00207 | 19305 | 25778 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000207s00015893.1 | PF04043.10 | PMEI | 16 | 103 | 1.50E-09 |
| Glyur000207s00015893.1 | PF01095.14 | Pectinesterase | 152 | 276 | 8.00E-49 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.131 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.132 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.111 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.323 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.981 |
| SRR2967015 | Control (Tissue:root) | 1.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.407 |
| SRR8749028 | MeJA induced 9h | 1.592 |
| SRR8749029 | MeJA induced 9h | 0.536 |
| SRR8749030 | Uninduced | 1.359 |
| SRR8749031 | Uninduced | 0.741 |
| SRR8749032 | Uninduced | 0.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.205 |
| SRR8400027 | Control-Root | 0.254 |