Gene detail information of Glyur000207s00015896.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47400.1 | 1.00E-151 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | XP_003598225.1 | 0 | Pectinesterase [Medicago truncatula] |
| COG | YP_004596660.1 | 8.00E-45 | Pectinesterase [Halopiger xanaduensis SH-6] |
| Swissprot | tr|Q9FHN4|PME60_ARATH | 0 | Pectinesterase 60 (Precursor) |
| trEMBL | tr|G7IYH9|G7IYH9_MEDTR | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00207 | 44207 | 46991 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000207s00015896.1 | PF04043.10 | PMEI | 32 | 182 | 6.70E-15 |
| Glyur000207s00015896.1 | PF01095.14 | Pectinesterase | 221 | 507 | 5.80E-129 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.069 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.070 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.787 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.598 |
| SRR2967015 | Control (Tissue:root) | 1.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.369 |
| SRR8749028 | MeJA induced 9h | 0.563 |
| SRR8749029 | MeJA induced 9h | 0.556 |
| SRR8749030 | Uninduced | 1.097 |
| SRR8749031 | Uninduced | 0.496 |
| SRR8749032 | Uninduced | 0.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.284 |
| SRR8400027 | Control-Root | 0.226 |